Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq34 123 6e-23 seq67 118 3e-21 seq5 86.0 1e-11 >seq34 Length=2241197 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || ||| ||||||| ||| |||||| || |||| Sbjct 1642673 AAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCTTCTGATTCAATCGATAAT 1642732 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || |||||||| |||||||| || ||||||||| || || ||| |||| || ||| Sbjct 1642733 GTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAACAACGACTGATTTTC 1642792 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| || ||||||||||| ||||| | || |||||| | || || || ||| Sbjct 1642793 GCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTACAACATTCAAAAGGAATCT 1642852 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 1642853 ACACTTCA 1642860 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || ||||| ||||| || ||||||||||||||| |||||| Sbjct 1642889 CAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCTGAC 1642948 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || || |||||||||||||| || ||||| || || || ||| Sbjct 1642949 TCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAA 1643008 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| ||||||||||| | || || | |||||||| | Sbjct 1643009 CGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAATATT 1643068 Query 206353 CAGAAAGAGTCTAC 206366 || || || || || Sbjct 1643069 CAAAAGGAATCAAC 1643082 >seq67 Length=1953875 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || || ||| ||||||||||| |||||| Sbjct 1415661 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1415602 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || || |||||||||||||| || ||||| ||| || ||| ||| Sbjct 1415601 TCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1415542 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || |||||||| ||||| ||||||||||| | |||||| | ||||||||| || Sbjct 1415541 CGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAACATC 1415482 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || || || ||||| || Sbjct 1415481 CAAAAGGAATCGACTCTCCA 1415462 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || |||||||||||||| |||||| || | || || || ||| Sbjct 1481321 ACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCTGACTCAATTGACAATGTGAAACAA 1481262 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| || || || ||| | || ||||| || || ||| Sbjct 1481261 AAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAACAACGTCTCATCTTTGCTGGTAAG 1481202 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| | ||| | | ||||||||| |||| || || ||||||||||| Sbjct 1481201 CAATTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAAAAGGAATCTACTCTTCA 1481143 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || |||||||||||| || ||| | |||| Sbjct 1481786 AAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCCGACTCCATCGATAAT 1481727 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || |||||||| || ||||| || ||||| ||| || ||| ||| | || ||||| Sbjct 1481726 GTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCAACAACGTCTCATCTTT 1481667 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || |||||||||||||| | ||| | | || |||||| |||| || || ||| Sbjct 1481666 GCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAGGAATCT 1481607 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 1481606 ACTCTTCAC 1481598 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || ||| ||||||||||||| |||||| || | || Sbjct 1481102 AAGACTCTGACTGGCAAGACTATTACTCTGGAAGTGGAAAGCTCTGACTCAATTGACAAT 1481043 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||||||||||||| || ||||| || || ||| ||| || | ||||| Sbjct 1481042 GTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGACCAACAACGATTGATCTTT 1480983 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || || || Sbjct 1480982 GCTGGTAAGCAATTGGAAGATGGCCGCACTTTGTCGGACTACAACATTCAAAAGGAATCG 1480923 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 1480922 ACCCTTCA 1480915 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || || ||| ||||||||||| |||||| Sbjct 1415889 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1415830 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||||||||| || ||||| ||| || || ||| Sbjct 1415829 TCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAGCAA 1415770 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || ||||| ||||||||||| | ||| | | || |||||| || Sbjct 1415769 CGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAACATC 1415710 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 1415709 CAAAAGGAATCTACTCTTCAC 1415689 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || || ||| ||||||||||| |||||| Sbjct 1416117 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1416058 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||||||||| || ||||| ||| || || ||| Sbjct 1416057 TCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAGCAA 1415998 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || ||||| ||||||||||| | ||| | | || |||||| || Sbjct 1415997 CGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAACATC 1415938 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 1415937 CAAAAGGAATCTACTCTTCAC 1415917 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || || || |||||||||||||| |||||| Sbjct 1481570 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCTGAC 1481511 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || || |||||||||||||| || ||||| ||| || || ||| Sbjct 1481510 TCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 1481451 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || || || || || || || |||||||| | ||| | | || |||||| | Sbjct 1481450 CGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAACATT 1481391 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || |||||||||||| Sbjct 1481390 CAAAAGGAATCTACTCTTCAC 1481370 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || || || |||||||||||| || ||| | | || Sbjct 1416334 CAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCCGACTCCATTGACAA 1416275 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || || ||||| || ||||| || ||||| ||| || ||| ||| | || ||||| Sbjct 1416274 TGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGACCAACAACGTCTCATCTT 1416215 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || ||||||||||| | ||| | | || |||||| | || || || || Sbjct 1416214 TGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTACAACATTCAAAAGGAATC 1416155 Query 206364 TACTCTTCAC 206373 |||||||||| Sbjct 1416154 TACTCTTCAC 1416145 >seq5 Length=1173598 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||||| | |||| || ||||||||||||||||| || ||||| ||| || Sbjct 909209 AGCTCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 909268 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || ||| | | || ||||| || ||||| ||||||||||| | ||| | | || Sbjct 909269 GATCAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGAC 909328 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||| |||| || || || ||||||||| Sbjct 909329 TACAACATCCAAAAGGAATCCACTCTTCAC 909358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819376644574