Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq67 109 5e-19 seq1 82.4 7e-11 >seq67 Length=1953875 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| | ||||| |||||| | |||||||| | | Sbjct 1416155 GATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGTTTACCAGCA 1416214 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| |||||||| || ||||| ||||| ||||||||||| | Sbjct 1416215 AAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGTTTGACA 1416274 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | |||| | |||||||| | || | || || ||||| ||||| || Sbjct 1416275 TTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTG 1416334 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 1416335 ACGAAAATTTGCATG 1416349 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| ||||||||||| | || || |||||| | ||||||||||| | Sbjct 1481608 GATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTACCGGCA 1481667 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || ||||| || ||||| || || |||||||| |||| Sbjct 1481668 AAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTCACA 1481727 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | |||| | |||||||| | || | || || ||||| || ||||| Sbjct 1481728 TTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGGGTTTTA 1481787 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 1481788 ACGAAAATTTGCATG 1481802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | || || ||||||||||||||||| || || || |||||| Sbjct 1480909 ACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTCC 1480968 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || ||||| | | |||| | || ||||| || ||||| || ||||| || || | Sbjct 1480969 AATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTGA 1481028 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || |||||||||| | || | | || | |||||||| | || | || || Sbjct 1481029 ATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTTG 1481088 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | || || ||||| Sbjct 1481089 CCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 >seq1 Length=3895514 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 47057 CATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACA 47116 ||| ||| | || ||||| || | || || || || || | | || |||||| | | Sbjct 3274820 CATTGAACAAGAATTTTTGACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAACTCCAA 3274879 Query 47117 GTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACC 47176 | ||||||| |||| ||||| ||||| || |||||||| ||||| || || ||| Sbjct 3274880 GCTTATGTGCCAATACATTGAATTTGTCGCCGATCGTCTCTTGGTTGCTCTTGGTCAAGA 3274939 Query 47177 GAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAA 47236 || ||| || | |||||| ||||| || ||| | | || || || | ||||| Sbjct 3274940 TAAGCATTACAACTCCACTAATCCCTTTGACTTCATGGATATGATCTCCCTTCAAGGCAA 3274999 Query 47237 AACCAATTTTTTCGAGAAACGAGTC 47261 |||||| || || || ||||| ||| Sbjct 3275000 AACCAACTTCTTTGAAAAACGTGTC 3275024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610639981840