Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq34 87.8 2e-12 seq4 84.2 2e-11 seq67 82.4 7e-11 >seq34 Length=2241197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || ||| | || || | ||||| ||| || Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||| | || |||||||| ||| || || || ||||| || ||||||||| Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | || || ||| | ||||||| | | | ||||||||| Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||||| ||||| || | || || || ||| Sbjct 1643066 ATTCAAAAGGAATCAACATTACACTTGGTATTA 1643098 >seq4 Length=1266665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 110045 ACACGTTTTTCGAAAAAATTAGTTTTGCCCTCGAGAGATATATTATTCATAAACTCGAAA 110104 ||||| ||||| ||||| || |||||||| | ||||| || | |||||| || ||| Sbjct 715160 ACACGCTTTTCAAAAAAGTTGGTTTTGCCTTGAAGAGAGATCAGGTCCATAAAGTCAAAA 715101 Query 110105 GGATT-GAC-AGTGTTAAAGTGTTTGTCGTAGCCCAATTCGAATAGCAATCGATCCGCCA 110162 ||||| || | | ||| |||||||| | || | | | |||||| ||||| |||| Sbjct 715100 GGATTAGAGGAAAGGTAA--TGTTTGTCTTGACCAAGAGCAACTAGCAAGCGATCGGCCA 715043 Query 110163 CAAATTCAATATACTCGCACATGGACTGTACGTTCATGCCTAACATGGCAACTGGTAGAG 110222 |||||||||| || | |||||| | | ||||| || | || || || |||| || Sbjct 715042 CAAATTCAATGTATTGGCACATCAGTTTGGCATTCATACCAATCAGAGCCACCGGTAAAG 714983 Query 110223 CGGTAGTaaaaaaaTCCTTTTCAATGTCGACAGCCTCTACGA 110264 | || ||||| || | ||| || | || || || |||| Sbjct 714982 CATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTCAACGA 714941 >seq67 Length=1953875 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || || | || || | ||||| ||| | Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||| | || || ||||| ||| ||||| || ||||| || ||||||||| Sbjct 1415832 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1415773 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || || ||| | ||||||| | | | || || ||||| Sbjct 1415772 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415713 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| ||||| || |||| || ||| Sbjct 1415712 ATCCAAAAGGAATCTACTCTTCACTTGGTG 1415683 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || || | || || | ||||| ||| | Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||| | || || ||||| ||| ||||| || ||||| || ||||||||| Sbjct 1416060 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1416001 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | || || ||| | ||||||| | | | || || ||||| Sbjct 1416000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415941 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| ||||| || |||| || ||| Sbjct 1415940 ATCCAAAAGGAATCTACTCTTCACTTGGTG 1415911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093877014080