Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 109 8e-18 seq2 109 8e-18 seq67 104 3e-16 seq4 86.0 9e-11 >seq5 Length=1173598 Score = 109 bits (120), Expect = 8e-18 Identities = 176/253 (70%), Gaps = 15/253 (6%) Strand=Plus/Minus Query 724890 TATGCCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTT 724949 |||||||||||| || ||||| ||| | ||||| ||||||||| |||| | Sbjct 889658 TATGCCTCGTAC---------ATTTACAAAGTGTTGAAGCAAGTGCACCCCGACACCGGT 889608 Query 724950 GGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGAC 725009 ||| ||||||||| ||||||| ||| ||||||| ||||||||||| || | || Sbjct 889607 -----ATC-TCCAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAACGATATCTTTGAA 889554 Query 725010 CGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG 725069 || || | |||| ||| |||| || |||||||||| ||| ||| | Sbjct 889553 CGTATTGCTTCCGAAGCCTCCAAGTTGGCTGCCTACAACAAGCGCTCCACTATCTCTTCT 889494 Query 725070 CGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTC 725129 || || ||||| ||| | || || || ||| ||| || ||| |||||| |||||| || Sbjct 889493 CGTGAAATCCAAACCTCTGTTCGTCTCATCTTGCCTGGTGAATTGGCCAAGCACGCTGTG 889434 Query 725130 TCCGAGGGCACCA 725142 || || || |||| Sbjct 889433 TCTGAAGGTACCA 889421 >seq2 Length=1684868 Score = 109 bits (120), Expect = 8e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 259934 TTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCC 259993 || |||||||| || || || || || | || || || || || | |||||| | Sbjct 855212 TTCAATGCCGGTACACCTCGTCCCCAAATGTCCTCCTGTTTCTTGCTCACCATGAAAGAA 855271 Query 259994 GATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCC 260053 || || ||||||||||||||||| || ||||| ||| || | ||||||||| | || Sbjct 855272 GACTCTATCGAGGGCATCTATGAAACTCTCAAAGTGTGTGCCCAAATCTCCAAGACAGCA 855331 Query 260054 GGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACC 260113 || ||||| ||| | | ||||| | || || |||| | ||| | || || || Sbjct 855332 GGTGGCATTGGTCTCAACATCCACAATATTCGTGCTACGGGTTCTTACATTGCTGGTACA 855391 Query 260114 AACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTAC 260173 || ||| | ||||| || || | || ||||| || ||||| ||| |||| || || || Sbjct 855392 AATGGCTATTCCAATGGTATTCTTCCTATGCTGCGTGTTTTCAACAACACAGCCCGTTAT 855451 Query 260174 GTCGACCA 260181 |||||||| Sbjct 855452 GTCGACCA 855459 >seq67 Length=1953875 Score = 104 bits (114), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||||||| | ||||| || || ||| || | | ||| ||||||||| || Sbjct 310593 ATTTACAAGGTGTTGAAGCAAGTCCATCCCGACACTGGT-----ATC-TCCAACAAGGCC 310646 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||| ||||||| ||||||||||| || | || || || | | | || || Sbjct 310647 ATGTCCATCTTGAACTCCTTTGTCAACGATATCTTTGAACGTATTGCCTCTGAAGCTTCC 310706 Query 725031 CGCCTGGCGCGCTC-CAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 |||| |||| ||||||||| ||| ||| | || || ||||| ||| | || Sbjct 310707 AAGTTGGC-CGCTTACAACAAGCGTTCCACCATCTCTTCCCGTGAAATCCAAACCTCTGT 310765 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| ||| ||| ||| |||||| |||||||||||| || || |||| Sbjct 310766 CCGTCTTATCTTGCCCGGTGAATTGGCCAAGCACGCCGTCTCTGAAGGTACCA 310818 >seq4 Length=1266665 Score = 86.0 bits (94), Expect = 9e-11 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || ||||| || ||||| | ||||| |||| ||| | | || | | |||||||| Sbjct 714937 ATTATCGTTGAAGCCGTTGCTATCGAACAAGAATTTTTGACAGATGCTTTACCGGTGGCT 714996 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || || || ||||| |||| || |||||||| |||||||||||| || ||||| ||| Sbjct 714997 CTGATTGGTATGAATGCCAAA-CTGATGTGCCAATACATTGAATTT-GTGGCCGATCGCT 715054 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || || || | || || || |||| | | || || || | ||| Sbjct 715055 TGCTAGTTGCTCTTGG-TCAAGACAAACATTACCTTTCCTCTAATCCTTTTGACTTTATG 715113 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 || ||||||| || | ||||| ||||||||||| || Sbjct 715114 GACCTGATCTCTCTTCAAGGCAAAACCAACTTTTTTGA 715151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177802133527228