Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq67 125 6e-24 seq34 102 7e-17 >seq67 Length=1953875 Score = 125 bits (138), Expect = 6e-24 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 35502 CTTTATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 ||||||| ||||||||| | | | ||||||||| | || |||||||| |||||| Sbjct 1415429 CTTTATTGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTG 1415488 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 ||||| | ||| || || | || |||| |||||||| || || ||||| || |||||| Sbjct 1415489 TAATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGG 1415548 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTC 35680 || | ||||| | |||||||| |||||||| || | | | | | | ||| Sbjct 1415549 TCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGAT 1415608 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| |||| || || || || || |||||||| || ||||| || ||||| Sbjct 1415609 GATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 109 bits (120), Expect = 5e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || ||||||||||||||||| || | | Sbjct 1480891 CCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGAC 1480950 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| |||||||| ||||| ||||| || || ||||| | ||| Sbjct 1480951 AAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGG 1481010 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| |||||||| |||| | | | | | ||| ||| |||| Sbjct 1481011 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCC 1481067 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || |||| ||| |||||||| || ||||| Sbjct 1481068 ACTTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||||| |||||||| || | Sbjct 1415666 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415725 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| || ||||| || | ||| Sbjct 1415726 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1415785 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||||||||||| | | | | | ||| |||||||| Sbjct 1415786 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1415845 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || |||||||| || ||||| || ||||| Sbjct 1415846 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||||| |||||||| || | Sbjct 1415894 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415953 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| || ||||| || | ||| Sbjct 1415954 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1416013 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || ||||||||||||| | | | | | ||| |||||||| Sbjct 1416014 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1416073 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || |||||||| || ||||| || ||||| Sbjct 1416074 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | ||| |||||||| ||||||||||| | Sbjct 1481119 CCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAA 1481178 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| || | || || || || | ||| Sbjct 1481179 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGG 1481238 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| |||||||| |||| | | | | | ||| ||| |||| Sbjct 1481239 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCC 1481295 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || ||||| || |||||||| || ||||| Sbjct 1481296 ACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| ||||||||||||||||| || | Sbjct 1481347 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 1481406 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || | || ||||| ||||| ||||| || ||||| || | |||| Sbjct 1481407 AGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGA 1481466 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| |||||||| |||| | | | | | ||| ||| |||| Sbjct 1481467 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCT---TTCC 1481523 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || ||||| || || ||||| || ||||| Sbjct 1481524 ACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 >seq34 Length=2241197 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| |||| | || ||||| ||||| || ||||||||||| |||||||| | Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| | || |||| ||||| || ||||| |||| || ||||| || | ||| Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| |||||||| || | |||| | | | ||| |||||||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGA-CGTTGTCGATAGAGTCAGAGGATTCCAC 1642934 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || ||||| || || | || || ||||| || ||||| Sbjct 1642933 TTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793070317520