Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq18 147 3e-30 seq5 145 1e-29 >seq18 Length=557977 Score = 147 bits (162), Expect = 3e-30 Identities = 519/795 (65%), Gaps = 22/795 (3%) Strand=Plus/Minus Query 161117 GGGGATTTGACTGACTC--CCTGAACATAGTCTCTATCATTAAGGAAGTAGAACCTGATG 161174 || |||||||||||||| |||| | ||| || || |||| ||||| || Sbjct 112449 GGTGATTTGACTGACTCTACCTG--TTTGGTCCACATTATCTCCCAAGTGCAACCTACTG 112392 Query 161175 AGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATA 161234 | | ||||| || | || || ||| || || || || || || ||||||| | Sbjct 112391 AAGTGTACAATCTTGCTGCCCAATCTCACGTCAAGGTGTCCTTTGATATGTCTGAATACA 112332 Query 161235 CAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTA 161294 | | | |||||||| || || || | |||| || || | ||| | || Sbjct 112331 CTGGTGATGTGGATGCTCTCGGTACTCTCCGTTTATTAGATGCTATCCGTACCTGTGGAT 112272 Query 161295 TGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAG 161354 |||| ||| | |||||| ||||||| || |||||| || ||||| || ||| | Sbjct 112271 TGACTGATCGCGTCCGTTTCTACCAAGCCTCCACCTCGGAATTGTACGGTAAGGTCGTTG 112212 Query 161355 AGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAAC 161414 | || || || || ||||| || || ||||| || || || || ||||| || ||||| | Sbjct 112211 AAACCCCTCAAAAGGAAACCACGCCCTTCTATCCCCGTTCCCCCTATGGTGTGGCTAAGC 112152 Query 161415 TCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTG 161474 ||||||| || |||||||| || || | || || ||| | ||| ||| | Sbjct 112151 TCTATGGTTACTGGATTGTGGTCAATTATCGTGAATCCTACAACATGTATGCCTGTAACG 112092 Query 161475 GTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTA 161534 ||||||| |||||||| || || || || || || || || || ||||| ||||| Sbjct 112091 GTATTCTCTTCAACCACGAATCTCCCCGCCGAGGCCGTACCTTTGTGACCCGCAAGAT-- 112034 Query 161535 CTAGGGGACTATC-CCG-TATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCT 161592 || | || || ||| ||| || | || || ||||| ||||| ||||| | Sbjct 112033 CTCCCGTGCTGTCGCCGATATCCACTTGGGCCGTCAAGAATGTCTGTACCTCGGTAACAT 111974 Query 161593 AAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTT 161652 | ||| || |||||||||||||| | || || || || | ||||||||||||| | Sbjct 111973 TGATGCAAAGCGTGATTGGGGTCATGCCAAGGATTACGTTGAAGGTATGTGGTTGATGCT 111914 Query 161653 ACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTGAAGGA 161712 ||||| || |||||||||| ||| | || || ||| || | | || || || Sbjct 111913 GCAACAAGACCAACCTGATGACTTTGTATTGGCTACTGGTGAA-ACT-CACACTGTCCGA 111856 Query 161713 -CT----TTGTAGAGGCATCTGCTGAATACTTTGGTATGAAGATTGAGTGGCAGGGTGAA 161767 || ||| | |||| | ||||| || |||| ||||| ||| | |||||| Sbjct 111855 TCTTATATTGAAAAGGCCTTTGCTG-TGAC--TGGTCGCAAGATCATCTGGGAAGGTGAA 111799 Query 161768 GGATTGGATGAAGTGGGTATAGATAGATTTACAAAGAAGGTT--GTCGTTCGTGTGAGTG 161825 || || ||||| | |||| |||| | | | ||| | | || || ||| | | Sbjct 111798 GGTGTGAATGAAATCGGTAAAGAT-GCTGAAACTGGAAAGATCCGT-GTCCGTATCGATC 111741 Query 161826 ACAAATACTTCAGACCAGCAGAGGTTGAAACTCTCTGGGGTGATCCCACTAAGGCTAAAG 161885 |||||||||| | || || || || ||| || | |||||| || || |||||||| | Sbjct 111740 CCAAATACTTCCGTCCTGCCGAAGTCGAATTGCTGTTGGGTGACCCTACCAAGGCTAAGG 111681 Query 161886 AGGTATTGGGTTGGA 161900 | ||||| |||| Sbjct 111680 AAAAGTTGGGCTGGA 111666 >seq5 Length=1173598 Score = 145 bits (160), Expect = 1e-29 Identities = 356/537 (66%), Gaps = 2/537 (0%) Strand=Plus/Minus Query 161160 AAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCG 161219 |||| ||||| ||| ||||||||| | || || || || || || || || || | Sbjct 870369 AAGTCCAACCTACTGAAATCTACAACTTGGGTGCTCAATCACACGTCAAGGTGTCCTTTG 870310 Query 161220 AGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAG 161279 | ||||||| || | | |||||||| || ||| | | ||||||| || Sbjct 870309 ATATGTCTGAATACACTGGTGATGTGGATGCTCTTGGTACCTTGCGTTTATTGGATGCTA 870250 Query 161280 TTCGTCTCCTAGGTAT-GACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTG 161338 | || | ||| | || ||| || | || || |||| || || |||||| ||| || Sbjct 870249 TCCG-CACCTGTGGATTGACTGAACGTGTGCGCTTCTATCAAGCCTCCACCTCTGAATTA 870191 Query 161339 TATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCA 161398 ||||| ||| || || || || || ||||| || || |||||||| || ||||| Sbjct 870190 TATGGTAAGGTTGTCGAAACTCCTCAAAAGGAAACCACTCCCTTCTACCCTCGCTCTCCT 870131 Query 161399 TATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGG 161458 ||||| || || || ||||| || || ||||| || ||||| | || || Sbjct 870130 TATGGTGTGGCCAAGCTCTACGGTTACTGGATCGTGGTCAACTATCGTGAATCCTACAAC 870071 Query 161459 ATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTC 161518 ||| | || ||| ||||| || ||||| || || || || || || ||| || ||| Sbjct 870070 ATGTATGCTTGTAACGGTATCCTCTTCAATCACGAATCTCCTCGTCGTGGTCGCACCTTC 870011 Query 161519 GTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTA 161578 |||||||||||||| | | || | | ||| | || | || || || | Sbjct 870010 GTAACCCGTAAGATCTCCAAGGCTGTGGCTGATATCCATTTGGGCCGTCAAGAATGCTTG 869951 Query 161579 TACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAGGCT 161638 ||| | ||||| | | ||| || || |||||||||||| |||||||| || | | Sbjct 869950 TACTTGGGTAACATTGATGCAAAGCGTGACTGGGGTCATGCTCGGGACTATGTCGAAGGT 869891 Query 161639 ATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAA 161695 |||||||||||||| ||||| || ||||| |||| |||| | || || ||| || Sbjct 869890 ATGTGGTTGATGTTGCAACAAGACCAACCTGAAGACTTTGTGTTGGCTACTGGTGAA 869834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928742332720