Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 163 2e-35 seq1 152 4e-32 seq56 98.7 8e-16 >seq4 Length=1266665 Score = 163 bits (180), Expect = 2e-35 Identities = 336/495 (68%), Gaps = 11/495 (2%) Strand=Plus/Plus Query 44069 ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAA 44128 || ||| | || || || ||||| | |||||| | | || || || |||| ||| Sbjct 714673 ATCAAAAAAAAGGCGGATTGGGCTTTCCGATGGATTAGTGGTAACGAATCATTTGCTGAA 714732 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || ||||| || || || | |||||||||||| |||||||| || | ||||| | || Sbjct 714733 CGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTTGCCTCTATC 714792 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 || ||| | |||||||| |||||||||||||||||||| || || ||||| | || ||| Sbjct 714793 TTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAACTGATCAGT 714852 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGAT 44308 ||||| ||||| | ||| || ||||| ||| | || |||| |||| || Sbjct 714853 CGTGACGAAGGTCTCCATACTGACTTTGCATGCCTTTTGTTTGGTCATCTTCATCAC--C 714910 Query 44309 AAGCCTTCATGTAAGACAATTAC-AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGA 44367 || || || | | | | || ||| | || || || || || |||||||| Sbjct 714911 AACCCAGCAACT--CTCGTGTCCTGGAAATTATCGTTGAAGCCGTTGCTATCGAACAAGA 714968 Query 44368 ATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG---AACTTTTGATGAA 44424 |||| ||||| || ||||| || | | || || ||||||| ||| ||||| Sbjct 714969 ATTTTTGACAGATGCTTTACCGGTGGCTCTGATTGGTATGAATGCCAAAC---TGATGTG 715025 Query 44425 CCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTA 44484 |||||| ||||||| | || ||||| || || | | || ||| || ||||| || Sbjct 715026 CCAATACATTGAATTTGTGGCCGATCGCTTGCTAGTTGCTCTTGGTCAAGACAAACATTA 715085 Query 44485 TATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTT 44544 || || || ||||| |||||||| || || | |||||||||| ||||| Sbjct 715086 CCTTTCCTCTAATCCTTTTGACTTTATGGACCTGATCTCTCTTCAAGGCAAAACCAACTT 715145 Query 44545 TTTTGAAAAACGCGT 44559 ||||||||| || || Sbjct 715146 TTTTGAAAAGCGTGT 715160 >seq1 Length=3895514 Score = 152 bits (168), Expect = 4e-32 Identities = 391/586 (67%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 || ||| ||| ||||| | || || || ||||| | |||||| | | ||||| Sbjct 3274523 AATAGTTCCTTGTATTAAGAAAAAGGCTGATTGGGCTTTCCGATGGATCAGTGGCAATGA 3274582 Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 || |||| ||||| ||||| || ||||| | ||||||||| || ||||| || || | Sbjct 3274583 ATCATTTGCTGAACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGC 3274642 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| |||| || ||| | |||||||| |||||||||||||| ||||| || || || Sbjct 3274643 CTTTGCCTCCATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAA 3274702 Query 44236 TGAGTTAATAAGTCGTGATGAAGG-CTT-ACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||| || || ||||||| ||||| ||| ||| | || |||||||| || || |||| Sbjct 3274703 TGAATTGATCTGTCGTGACGAAGGTCTTCACACT--GACTTTGCTTGTTTATTGTTTGGT 3274760 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 || | | || | ||| || | | || || |||| || || || Sbjct 3274761 CATAT---TCATCATCAACCTAGCAGTGATCGTGTGCGTGAAATCATTGTGGAAGCTGTT 3274817 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 || |||||||||||| |||| || | ||||| | | || || ||||| | Sbjct 3274818 GCCATTGAACAAGAATTTTTGACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAACTCC 3274877 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 | || ||| |||||| ||||||| | || |||||| | | | | || ||| Sbjct 3274878 AAGCTT-ATGTGCCAATACATTGAATTTGTCGCCGATCGTCTCTTGGTTGCTCTTGGTCA 3274936 Query 44473 CGATAAACACTA-TATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAG 44531 ||||| || || | | || || ||| ||||| || ||||| | || || | ||| Sbjct 3274937 AGATAAGCATTACAACTCCACTAATCCC-TTTGACTTCATGGATATGATCTCCCTTCAAG 3274995 Query 44532 GCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA 44591 ||||||| ||||| ||||||||||| || || ||||| || || ||||||| | Sbjct 3274996 GCAAAACCAACTTCTTTGAAAAACGTGTCTCCGATTATCAACGTGCTGGTGTCATGAACA 3275055 Query 44592 CAA------GTGACAATAAATTTACTACGGATGAAGATTTCTAATT 44631 || || || || || ||| ||||| ||||||||||| Sbjct 3275056 AAACCCCTGAAGAAAAGAACTTCACTTTGGATGCCGATTTCTAATT 3275101 >seq56 Length=2073579 Score = 98.7 bits (108), Expect = 8e-16 Identities = 221/326 (68%), Gaps = 12/326 (4%) Strand=Plus/Plus Query 19322 AACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAA 19381 || ||||||| | | ||||| || ||| || | ||||| || || ||| ||| | Sbjct 300719 AAAAATTGGGTGTTCAGCATGTCAAGGGTCTTCTGTTGTATGGTCCTCCTGGTACTGGTA 300778 Query 19382 AAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTG 19438 |||| | || || | || || | || | | | ||||| ||||| ||||||| Sbjct 300779 AAACTCTGATGGCACGTCAAATTGGCAAGATGTTGAATGCAAAAGAACCT---AAAATTG 300835 Query 19439 TAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTT 19498 | | |||||||||| || | | |||| ||| || ||| ||||||||||| || | Sbjct 300836 TCAGTGGTCCTGAAGTCCTCAGCAAATTTGTTGGCCAAAGTGAAGAAAATGTGCGCAAGT 300895 Query 19499 TGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTA 19558 |||||||||| ||||||| ||| | ||| |||| || | ||| ||||||| Sbjct 300896 TGTTTGCTGAAGCTGAAGCCGAATACAAATCCAAAGGGGAGGAATCTGGTTTACACATTA 300955 Query 19559 TAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TC-TGGTG-TA--AATG 19612 | || | || ||||||||||| || ||||| || | ||| || ||||| || | | Sbjct 300956 TCATTTTTGACGAATTGGACGCTATATGTAAACAGCGTGGTAGTCGTGGTGATAGTACAG 301015 Query 19613 GAGTACATGACACTGTTGTCAATCAA 19638 | || |||| | |||||||||||| Sbjct 301016 GTGTTGGTGACTCGGTTGTCAATCAA 301041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455544664470