Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq28 145 8e-30 seq2 145 8e-30 seq4 102 9e-17 seq1 91.5 2e-13 >seq28 Length=432467 Score = 145 bits (160), Expect = 8e-30 Identities = 338/507 (67%), Gaps = 2/507 (0%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 ||| ||||| || |||||||| ||||| ||||| || || ||| || || || | Sbjct 234053 CATAAAGAGATCAGGGATCCAGAGGGCATAAAAGAGATCACGAGCACGGATTTCATCCTT 233994 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| ||| || || || | ||| | |||||| || ||||| || |||| ||| Sbjct 233993 GCCAACATTCTTGCGAAGATCCAAGAAGGTAAAGATGTCCGCATGCCAAGGTTCCAAATA 233934 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 || || || | ||| ||| ||| ||| || || | ||||| || || || ||||| Sbjct 233933 CATAGCAAAAGCACCAGGGCGTTTGTTGCCACCTTGATCCACGTAACGAGCGGTATTGTT 233874 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 ||| || || ||||| || | || || | || | |||||| || || ||| | Sbjct 233873 GAAGACACGAAGCATAGGAAGAATACCATTGGAGTAGCCGTTGGTTCCCGCGATGTAAGA 233814 Query 79623 ACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 || | || |||||||| | || || || ||||| || | | |||||| || || Sbjct 233813 GCCTGTGGCACGAATGTTGTGGATGTTGAGACCAATGCCACCTGCCGTCTTGGAAATTTG 233754 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || ||| | ||||| || |||||||| || ||||| ||||| || ||||| | || || Sbjct 233753 GGCACACACTTTGAGAGTTTCGTAGATACCTTCGATGGAGTCTTCTTTCATGGTGAGCAA 233694 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTC-GTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 ||| ||| || | || |||| | || || |||||||| | ||| || | || | Sbjct 233693 GAAACAGGAGGAGAGTTG-GGGTCGAGGAGTGCCTGCGTTGAATAAGGTAGGACTAGCAT 233635 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861 | |||||| |||||| | ||| || | ||| || || | | | || || | Sbjct 233634 GGGTGAAGTACTTTTCGGACATGAGGTTGTAGGTTTCAATAGCAGAGTCAATATCTTCAC 233575 Query 79862 CGTGGATGCCGACCGCGACGCGCATGA 79888 | ||||||||||| || || ||||||| Sbjct 233574 CATGGATGCCGACGGCCACACGCATGA 233548 Score = 107 bits (118), Expect = 2e-18 Identities = 141/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 |||||||| || |||||||| ||||||||||| || || | |||||| || | | || Sbjct 235249 TAGTACATACCGGTCTTGAGCCCCTTCTTCCAGCCATAAAAGTGCATGCTAGTTAATTTA 235190 Query 78259 GCCAGACTCGGGTTCTCC-ATGAAGATGTTGAGCGACTGGGAC--TGGTCGATGTACGCA 78315 ||| | | ||| | || ||||||||||||| |||| ||| ||||||||| | ||| Sbjct 235189 -CCAAAGTTGGGGACGCCGATGAAGATGTTGA--GACTTTGACTTTGGTCGATGAAAGCA 235133 Query 78316 CCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAA 78375 || |||||||| ||||| || || | | ||||| || ||||||| |||| ||| Sbjct 235132 CCACGGTCGGCGGCCATATCAATCAATGTACGTTGCGAGATTTCCCAGACGGTCTTGTAC 235073 Query 78376 ATGGCCTTCAG 78386 ||||| || || Sbjct 235072 ATGGCTTTGAG 235062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/205 (72%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC-ATCGACATGGC 20676 ||||| | ||| |||| |||||| ||||||||| | || | | ||| || || ||||| Sbjct 235062 CTCAAAGCCATGTACAAGACCGTCTGGGAAATCTCGCA-ACGTACATTGATTGATATGGC 235120 Query 20677 GGCCGATCGCGGCGCCTACATCGACCA--GTCCCAGTCGCTCAATGTCTTCAT-GGAGAA 20733 ||||| || || || | ||||||||| ||| |||| |||| ||||||| || | Sbjct 235121 CGCCGACCGTGGTGCTTTCATCGACCAAAGTCAAAGTC--TCAACATCTTCATCGGCGTC 235178 Query 20734 TCCGAGCCTGGCGAAGCTGAGCTC-CATGCATATGTACGGCTGGCACAAGGGGCTCAAGA 20792 || | ||| || | | || |||||| | || |||||| | ||||||||||||| Sbjct 235179 CCCAACTTTGGTAAA--TTAACTAGCATGCACTTTTATGGCTGGAAGAAGGGGCTCAAGA 235236 Query 20793 CGGGCATGTACTATCTGCGGACCCG 20817 | || |||||||| || || ||||| Sbjct 235237 CCGGTATGTACTACCTCCGCACCCG 235261 >seq2 Length=1684868 Score = 145 bits (160), Expect = 8e-30 Identities = 308/458 (67%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 ||| ||||| || || |||||||| || ||||| || || ||| || || || | Sbjct 855613 CATAAAGAGATCGGGAATCCACAGAGCATAAAAGAGATCACGAGCACGGATTTCGTCCTT 855554 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| ||| || || || | |||| | |||||| | ||||| || || ||||| Sbjct 855553 GCCAACATTCTTGCGGAGATCCAAAAAGGTAAAGATGTCAGGATGCCAAGGTTCAAGATA 855494 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||| || | ||| || ||| || || |||| ||| || ||||| |||||||| Sbjct 855493 CATGGCAAAGGCACCAGGACGTTTGTTACCACCTTGGTCGACATAACGGGCTGTGTTGTT 855434 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 |||||| || ||||| || | || || | || ||| || || || || | Sbjct 855433 GAAAACACGCAGCATAGGAAGAATACCATTGGAATAGCCATTTGTACCAGCAATGTAAGA 855374 Query 79623 ACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 ||| | || ||||| || | || || || ||||| || | ||||||||| || Sbjct 855373 ACCCGTAGCACGAATATTGTGGATGTTGAGACCAATGCCACCTGCTGTCTTGGAGATTTG 855314 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || ||| | ||||| || || |||||||||||||| ||||| || ||||| | || || Sbjct 855313 GGCACACACTTTGAGAGTTTCATAGATGCCCTCGATAGAGTCTTCTTTCATGGTGAGCAA 855254 Query 79743 GAAGCAGCTCGACATCTGTGG--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 ||| ||| ||||| || || | || |||||||| ||||| | || || | || Sbjct 855253 GAAACAGGAGGACATTTGGGGACGAGGT--GTACCGGCATTGAATAAAGTAGGGCTTGCA 855196 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 || || ||||| |||| | ||| || | ||| || || Sbjct 855195 TGTGTAAAGAATTTTTCGGACATAAGGTTGTAAGTTTC 855158 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || ||||| | ||| |||||||| |||||||| ||||||||||| || || | ||||||| Sbjct 856821 CGGGTTCGGAGATAATACATGCCGGTCTTGAGTCCCTTCTTCCAGCCATAAAAGTGCATA 856762 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATGAAGATGTTGAGCGACTGGGAC--TGG 78303 || | || || |||| | | |||| | || || |||||||| | || ||| || Sbjct 856761 CTTGTCA-ATTTGCCAAAGTTGGGTACGCCAATAAAGATGTTCA--AGCTTTGACTTTGA 856705 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGAT 78338 || ||| ||||||| | ||| |||||||| || || Sbjct 856704 TCAATGAACGCACCTCTGTCTGCCGCCATATCAAT 856670 >seq4 Length=1266665 Score = 102 bits (112), Expect = 9e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAACGT 59984 ||| |||| || || ||||| | | ||||| ||| | | ||||||||| ||||| Sbjct 714676 AAAAAAAAGGCGGATTGGGCTTTCCGATGGATTAGTGGTAACGAATCATTTGCTGAACGT 714735 Query 59985 CTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTT 60043 || | ||||| || ||| |||||||| |||||||| || || | || |||| || Sbjct 714736 CTTGTTGCTTTCGC-TGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTTGCCTCTATCTT 714794 Query 60044 CTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCG 60103 ||||||||| || ||||| | ||||| || ||| |||||||| || ||||| || Sbjct 714795 CTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAACTGATCAGTCG 714854 Query 60104 GGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||||| || |||||| || |||||| Sbjct 714855 TGACGAAGGTCTCCATACTGACTTTGCA 714882 >seq1 Length=3895514 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 59923 TTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCATTTGCACAAC 59982 |||| |||| || || ||||| | | ||||| ||| | ||||||||| ||| Sbjct 3274537 TTAAGAAAAAGGCTGATTGGGCTTTCCGATGGATCAGTGGCAATGAATCATTTGCTGAAC 3274596 Query 59983 GTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||| | || ||||| ||| |||||||| |||||||||||||| | || | || Sbjct 3274597 GTCTTGTGGCCTTTGC-TGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATC 3274655 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| || ||||| | ||||| || ||| |||||||| || |||| | Sbjct 3274656 TTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATCTGT 3274715 Query 60102 CGGGACGAGGGCCTCCA 60118 || ||||| || || || Sbjct 3274716 CGTGACGAAGGTCTTCA 3274732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524155483360