Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 seq28 152 6e-32 seq18 107 2e-18 seq12 104 3e-17 seq5 91.5 2e-13 seq1 89.7 6e-13 >seq2 Length=1684868 Score = 159 bits (176), Expect = 4e-34 Identities = 369/549 (67%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTACGA 53253 ||||| || ||| | ||||| ||||| || || | || | || | ||| || ||| | Sbjct 855110 ATGCGTGTGGCCATTGGTATTCACGGGGAAGATATCGACTC-TGCCATTGAAACTTACAA 855168 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | |||| | |||||| || || | || || | ||||| || ||||| Sbjct 855169 CCTTATGTCCGAAAAATTCTTTACACATGCAAGCCCTACTTTATTCAATGCCGGTACACC 855228 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 || || || ||||| ||| ||| || | | ||||| || ||||| ||||| ||||| Sbjct 855229 TCGTCCCCAAATGTCCTCCTGTTTCTTGCTCACCATGAAAGAAGACTCTATCGAGGGCAT 855288 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 ||| || || ||||| | ||||||||| ||||||||| | ||||| || ||| || | Sbjct 855289 CTATGAAACTCTCAAAGTGTGTGCCCAAATCTCCAAGACAGCAGGTGGCATTGGTCTCAA 855348 Query 53434 CTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGG 53493 | | || | ||||| | || | || || || || ||| || |||| Sbjct 855349 CATCCACAATATTCGTGCTACGGGTTCTTACATTGCTGGTACAAATGGCTATTCCAATGG 855408 Query 53494 AATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGG 53553 || | |||||||| || || ||||||||||| ||||| || ||| |||| |||||| Sbjct 855409 TATTCTTCCTATGCTGCGTGTTTTCAACAACACAGCCCGTTATGTCGACCAAGGTGGTAA 855468 Query 53554 GAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTT 53613 || || || | || ||||| || || || || ||||| | ||||| | || Sbjct 855469 CAAACGTCCTGGTGCCTTTGCCATGTATCTTGAACCTTGGCATCCTGACATCTTTACCTT 855528 Query 53614 TCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAG 53672 | | || || || |||| || | || || || || ||| ||||| || ||| | Sbjct 855529 TTTGGATCTCCGCAAGAATGTTGGCAAGGACGAAATCCG-TGCTCGTGATCTCTTTTATG 855587 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTACCT 53730 ||||||||||||| || ||||| ||| ||| ||| |||| ||| || |||| | | Sbjct 855588 CTCTGTGGATTCCCGATCTCTTTATG--AAACGTGTTGAAGCCAACGGCGAATGGTCCAT 855645 Query 53731 GATGTGCCC 53739 | | ||||| Sbjct 855646 GTTTTGCCC 855654 Score = 98.7 bits (108), Expect = 1e-15 Identities = 306/461 (66%), Gaps = 21/461 (5%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||| ||||| || || ||||| || ||||| || ||||| ||| |||| ||| || Sbjct 856370 GGCGTACGAAACTCTCTTCTTGTGGCACCTATGCCCACTGCGTCAACGTCTCAAATCCTG 856429 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||| || || || || ||| ||||| | || ||||| || || Sbjct 856430 GGCTTTAACGAATGCTTTGAACCCTATACGTCCAACTTGTATACACGCCGTGTGCTCGCC 856489 Query 55598 GGTGAGTTTGTCATGATCAA--CAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGT 55655 ||||| ||| || |||| || | || | ||||| || | | || | | Sbjct 856490 GGTGAATTTCAAATTGTCAATCCATGG--CTTTTGAAGGATCTTGTGGAACTCGGAATTT 856547 Query 55656 GGAACCCGCAGAT--CAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG 55711 |||| | |||| ||||| || || ||| | || | || || || || ||| | Sbjct 856548 GGAAT--GAAGATGTCAAGAACCGTATCATGTCTG--ACAGTGGCTCTGTGCAAAATATC 856603 Query 55712 G---AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | || || | ||||||| || ||| || || ||||| || ||||| Sbjct 856604 CCAAATATCCCGGCTCACCTCAAGGCAATGTACAAAACTGTCTGGGAAATATCACAGCGT 856663 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGA 55826 | | ||||||| ||| || || | ||||||| ||| || || ||| || || ||| Sbjct 856664 ACTTTGATTGATATGGCGGCAGACAGAGGTGCGTTCATTGATCAAAGTCAAAG-CT-TGA 856721 Query 55827 ACATCTTCAT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGG 55885 ||||||| || || | | || | |||| || |||| ||||||||||| || ||| Sbjct 856722 ACATCTTTATTGGCGTACCCAACTTTGGCAAA-TTGACAAGTATGCACTTTTATGGCTGG 856780 Query 55886 AAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||||||||||||||||| || ||||| ||||| || ||||| Sbjct 856781 AAGAAGGGACTCAAGACCGGCATGTATTATCTCCGAACCCG 856821 >seq28 Length=432467 Score = 152 bits (168), Expect = 6e-32 Identities = 356/532 (67%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGT 53238 ||||| || | ||||||| || ||| | || ||||| ||||| || | || | || Sbjct 233535 CCTCAACATTTGATCATGCGTGTGGCCGTCGGCATCCATGGTGAAGATATTGACTC-TGC 233593 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 ||| || ||| || | ||| | |||||||||| || || || | || ||| | || Sbjct 233594 TATTGAAACCTACAACCTCATGTCCGAAAAGTACTTCACCCATGCTAGTCCTACCTTATT 233653 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGA 53358 |||||| || || || || || | || ||| ||| || | | ||||| || || Sbjct 233654 CAACGCAGGCACTCCTCGACCCCAACTCTCCTCCTGTTTCTTGCTCACCATGAAAGAAGA 233713 Query 53359 CTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGG 53418 ||| ||||| || |||||||| || ||||| | ||||||||| || |||||| | | || Sbjct 233714 CTCCATCGAAGGTATCTACGAAACTCTCAAAGTGTGTGCCCAAATTTCCAAGACGGCAGG 233773 Query 53419 TGGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 ||| || ||| || || | ||| | ||||| | ||| | ||| ||| || || Sbjct 233774 TGGCATTGGTCTCAACATCCACAACATTCGTGCCACAGGCTCTTACATCGCGGGAACCAA 233833 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | || |||| || | |||||||| || ||||||||||| || || || ||||| Sbjct 233834 CGGCTACTCCAATGGTATTCTTCCTATGCTTCGTGTCTTCAACAATACCGCTCGTTACGT 233893 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | || ||||| || ||| || | || || || || | || || ||||| || Sbjct 233894 GGATCAAGGTGGCAACAAACGCCCTGGTGCTTTTGCTATGTATTTGGAACCTTGGCATGC 233953 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-C 53657 ||||| | || | || || || |||| || | || || || || ||| | Sbjct 233954 GGACATCTTTACCTTCTTGGATCTTCGCAAGAATGTTGGCAAGGATGAAATCCG-TGCTC 234012 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 |||| || ||| || || ||||| || || ||||| ||| || ||||| Sbjct 234013 GTGATCTCTTTTATGCCCTCTGGATCCCTGATCTCTTTATGAAACGTGTGGA 234064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/158 (77%), Gaps = 8/158 (5%) Strand=Plus/Plus Query 55773 TGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCA--GTCCCAGTCTCTGAACAT 55830 ||||||| ||| || || |||||||| | ||||||||| ||| |||||| ||||| Sbjct 235108 TGATTGATATGGCCGCCGACCGTGGTGCTTTCATCGACCAAAGTCAAAGTCTC--AACAT 235165 Query 55831 CTTCATGGAGAATCCTTCACTG-GCCAAGTTGAGCTCG-ATGCACTTTTACGGGTGGAAG 55888 |||||| | | ||| ||| | || || | || | ||||||||||| || |||||| Sbjct 235166 CTTCATCG-GCGTCCCCAACTTTGGTAAATTAA-CTAGCATGCACTTTTATGGCTGGAAG 235223 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||||| |||||||| ||||||||||| || || ||||| Sbjct 235224 AAGGGGCTCAAGACCGGTATGTACTACCTCCGCACCCG 235261 >seq18 Length=557977 Score = 107 bits (118), Expect = 2e-18 Identities = 236/344 (69%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGT-GCCAATCACGAAATCTTCGGGAATCGACT-GCTGCAACATAAG 124564 |||| || ||||| || |||||| || || || || || | | || | |||| ||| | Sbjct 111864 TGTGAGTTTCACCAGTAGCCAAT-ACAAAGTCATCAGGT-TGGTCTTGTTGCAGCATCAA 111921 Query 124565 CCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCC 124624 |||||| ||| ||||| |||| || || ||||| || ||||| ||||| | ||| || Sbjct 111922 CCACATACCTTCAACGTAATCCTTGGCATGACCCCAATCACGCTTTGCATCAATGTTACC 111981 Query 124625 GAGCTC--GATTGGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGCG 124681 ||| | || |||| | | | | | || || | | | | | |||||||| Sbjct 111982 GAGGTACAGACATTCTTGACGGCCCAAGTGGATATCGGCGACAGCACGGGAGATCTTGCG 112041 Query 124682 CGTCACAAACT--CGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACAC 124739 |||||||| ||| || || || ||| ||||||||||| ||||| || |||| Sbjct 112042 GGTCACAAAGGTACGG--CCTCGGCGGGGAGATTCGTGGTTGAAGAGAATACCGTTACAG 112099 Query 124740 GCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGAC 124799 ||| |||| ||| || || || || || | ||||| || ||| ||||||| | | Sbjct 112100 GCATACATGTTGTAGGATTCACGATAATTGACCACAATCCAGTAACCATAGAGCTTAGCC 112159 Query 124800 ACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTG 124843 || ||||||||| ||||| ||||| || ||| |||| ||||| Sbjct 112160 ACACCATAGGGGGAACGGGGATAGAAGGGCGTGGTTTCCTTTTG 112203 >seq12 Length=2511101 Score = 104 bits (114), Expect = 3e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 || ||||||||||| || || ||| |||| || |||| ||| || || |||||||| Sbjct 922931 GATTCGTGGTTGAAGAGGATACCATTACAGGCGTACATGTTGTAAGATTCACGGTAGTTG 922872 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 | ||||| || || ||||||||| ||||||||||||| ||||||||||| || Sbjct 922871 ACCACAATCCAGTAGCCGTAGAGCTTGGCCACGCCATAGGGGGAACGGGGGTAGAAGGGA 922812 Query 124830 GTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 ||| |||| ||||| | | || || ||| || ||| ||||| ||| || ||| Sbjct 922811 GTGGTTTCCTTTTGAGGGGTTTCAACAACCTTACCGTACAATTCCGAGGTAGAGGCTTGA 922752 Query 124890 TAGAA 124894 ||||| Sbjct 922751 TAGAA 922747 >seq5 Length=1173598 Score = 91.5 bits (100), Expect = 2e-13 Identities = 252/380 (66%), Gaps = 5/380 (1%) Strand=Plus/Plus Query 158949 GCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAG 159008 ||||| | |||| || || ||||| || | ||||||||| || || | ||||| | Sbjct 869819 GCGGACGGTGTGAGTTTCACCAGTAGCCAACACAAAGTCTTCAGGTTGGTCTTGTTGCAA 869878 Query 159009 CATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCAT 159068 ||| | |||||| | ||||| || ||| | || ||||||||||| ||||| ||||| || Sbjct 869879 CATCAACCACATACCTTCGACATAGTCCCGAGCATGACCCCAGTCACGCTTTGCATCAAT 869938 Query 159069 GTT-CCCGAGCTCGATGACT-TTTCCAGACTTTTTCCA-CTCAGCCAGACCGAGCGTGAT 159125 ||| ||| || | | | | || | | | | | ||||||| | | | ||| Sbjct 869939 GTTACCCAAGTACAAGCATTCTTGACGGCCCAAATGGATATCAGCCACAGCCTTGGAGAT 869998 Query 159126 CTTGCGCGTCACAAACTCTGC-TCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGG 159184 ||| || || || || ||| || || || || || || || || || || ||| Sbjct 869999 CTTACGGGTTACGAA-GGTGCGACCACGACGAGGAGATTCGTGATTGAAGAGGATACCGT 870057 Query 159185 TACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCT 159244 ||||||| ||| ||| ||||| || || || || |||||||| || |||||| Sbjct 870058 TACAAGCATACATGTTGTAGGATTCACGATAGTTGACCACGATCCAGTAACCGTAGAGCT 870117 Query 159245 TGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCT 159304 ||| || || || ||| ||||| || || || || || |||||| | ||| Sbjct 870118 TGGCCACACCATAAGGAGAGCGAGGGTAGAAGGGAGTGGTTTCCTTTTGAGGAGTTTCGA 870177 Query 159305 GAACCTTTCCAAACATTTCA 159324 |||||| ||| | | |||| Sbjct 870178 CAACCTTACCATATAATTCA 870197 >seq1 Length=3895514 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||||||||| || || | | |||||||| | ||||| ||||| | ||| |||||| Sbjct 3274711 ATCAATTCATTGGAGAAGGTCAAACCAGGCATCAAACCACGTTTCTTGAGCCAGAAGATG 3274652 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | |||| |||| ||||||||| ||||| ||| |||||||| ||||| |||| Sbjct 3274651 GAGGCAAAGGCACCAGAGAAGAAGATACCTTCCACAGCAGCAAAGGCCACAAGACGTTCA 3274592 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTG--AGCCCATTCAGCtttt 74951 || || | | ||| | | | ||||| || | |||||| ||||| ||| Sbjct 3274591 GCAAATGATTCATTGCCACTGATCCA--TCGGAAAGCCCAATCAGCCTTT 3274544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215357021200