Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq67 132 3e-26 seq34 95.1 8e-15 seq15 93.3 3e-14 >seq67 Length=1953875 Score = 132 bits (146), Expect = 3e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| ||||| |||||||| ||||| ||||| ||||| || || Sbjct 1481128 AGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGG 1481187 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| ||||| ||||| || | ||| ||||| || || || | || ||| Sbjct 1481188 CCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCC 1481247 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| ||||||||||| | ||||| ||| ||| |||||||||| || Sbjct 1481248 TTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTA 1481307 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || |||||||| || ||||| Sbjct 1481308 ATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 123 bits (136), Expect = 2e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| |||||||||||||| || || ||||| || || Sbjct 1416131 AGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGG 1416190 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| ||||| || | ||| |||||||| || || | || ||| Sbjct 1416191 CCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCC 1416250 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || ||| ||| |||||||| | ||| | ||| | |||||||||| ||| Sbjct 1416251 TTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTA 1416310 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || || || | || || || ||||| |||||||||| Sbjct 1416311 ATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTTGA 1416353 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | ||||||||| || || |||||||||||||| || || || Sbjct 1480890 GCCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGA 1480949 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | ||| ||||| ||||| || || || |||||||| || || Sbjct 1480950 CAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGG 1481009 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||||||||||| | ||||| ||| ||| ||||| Sbjct 1481010 GATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCAC 1481069 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || |||||||| || ||||| Sbjct 1481070 TTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||||||||| |||||||| ||||| |||||||| Sbjct 1415438 CCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGAC 1415497 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| |||||||| || || ||||| || ||||| || || Sbjct 1415498 AAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 1415557 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||||| |||||| | || | ||| ||||| Sbjct 1415558 ATACCTTCCTTGTCTTGAATCTTTTG-TTTAACATTGTCGATAGAGTCAGATGATTCCAC 1415616 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || || || || ||||| || ||||| Sbjct 1415617 TTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 114 bits (126), Expect = 8e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| |||||||||||||| || || || || || || Sbjct 1481356 AGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGG 1481415 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| ||||| || ||||| || || || || || | || ||| Sbjct 1481416 CCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCC 1481475 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| ||||||||||| | || | ||| ||| |||||||||| || Sbjct 1481476 TTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTA 1481535 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| || ||||| Sbjct 1481536 ATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 114 bits (126), Expect = 8e-21 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || ||||| |||||||| ||||| || || || || || || Sbjct 1481584 AGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGG 1481643 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||||||||| || | ||| |||||||| || || | || ||| Sbjct 1481644 CCATCTTCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCC 1481703 Query 34609 TTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||||| || | | || || | ||| | |||||||||| ||| Sbjct 1481704 TTGTCTTGGATTTTTTGCTTCACATTAT-CGATGGAGTCGGAGGATTCCACTTCCAAGGT 1481762 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | ||||| || ||||| |||||||| Sbjct 1481763 AATGGTCTTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTT 1481804 >seq34 Length=2241197 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 34474 TCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAA 34533 ||||| || |||| ||||| || ||||| || | || ||||||||||| || ||| Sbjct 1643118 TCGTCACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAA 1643059 Query 34534 TCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || || | || ||| | ||||| | ||| || || ||||| || | ||| || || || Sbjct 1643058 TCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCG 1642999 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT 34652 || || | || ||||||||| |||||||| ||| ||| | || | ||| | Sbjct 1642998 GGAGGGATACCTTCCTTGTCTTGAATCTTTTG-TTTGACGTTGTCGATAGAGTCAGAGGA 1642940 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||||| || || ||||| || || | || || ||||| || ||||| Sbjct 1642939 TTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 >seq15 Length=645780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||||||||| |||||||| ||||| || || ||| Sbjct 322209 CCACCACGAAGACGGAGAACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAA 322268 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| || || || ||||| || || || || || Sbjct 322269 AGGGTACGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGA 322328 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 | || ||||| ||| ||| ||||| || Sbjct 322329 ATACCTTCCTTATCTTGGATTTTTTGCTT 322357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729239437902