Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq67 181 9e-41 seq34 170 2e-37 seq15 123 2e-23 seq22 109 5e-19 seq5 109 5e-19 seq56 100 2e-16 seq8 100 2e-16 >seq67 Length=1953875 Score = 181 bits (200), Expect = 9e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || |||||||| |||||| |||||||||| ||||||||| || Sbjct 1481117 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACTATTACTCTGGAAGTGGAAAGCTCT 1481058 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || |||||||| ||||||||||| ||||| || || ||||| ||| Sbjct 1481057 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGACCAA 1480998 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | || || || ||||||||||| | || | || || |||||| Sbjct 1480997 CAACGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTTTGTCGGACTACAAC 1480938 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||||||||| |||||| | |||||||| | ||| | || |||||| Sbjct 1480937 ATTCAAAAGGAATCGACCCTTCATTTGGTGCTTCGTCTTCGTGGTGGC 1480890 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| |||||||||| ||||||||| | || Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || |||||||| ||||||||||| ||||| || || || || || Sbjct 1415604 GACTCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 1415545 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || ||||||||||| | || | || ||||||||| Sbjct 1415544 CAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAAC 1415485 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||||| | |||||||| | ||| | || ||||| Sbjct 1415484 ATCCAAAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGTGGTGG 1415438 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| ||||||| | ||||||||| || Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || |||||||| ||||||||||| ||||| || || ||||||||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||||||||| | || |||| ||||||||| Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1481166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| | ||| | || ||||| || Sbjct 1481165 ATCCAAAAGGAATCTACTCTTCATTTGGTGCTCCGTCTCCGTGGTGGTAT 1481116 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || ||||| || |||||| | ||||| | ||||||||| | || Sbjct 1416349 CATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTC 1416290 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| ||||| | |||||||||||||| ||||| || ||||| || || || || || Sbjct 1416289 CGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGACCA 1416230 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || |||||||||||||| | || |||| || ||||| Sbjct 1416229 ACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTACAA 1416170 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | || ||||| | ||| | || ||||| || Sbjct 1416169 CATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1416119 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| |||||||||| ||||||||| | || Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || ||||| |||||||| || ||||| || || |||||||| Sbjct 1415832 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1415773 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || ||||||||||| | || | || || |||||| Sbjct 1415772 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415713 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 1415712 ATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1415663 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| |||||| |||||||||| ||||||||| | || Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || || ||||| |||||||| || ||||| || || |||||||| Sbjct 1416060 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1416001 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || ||||||||||| | || | || || |||||| Sbjct 1416000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415941 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 1415940 ATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1415891 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| |||||| ||||||| | ||||||||| || Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | || |||||||| ||||||||||| ||||| || || || ||||| Sbjct 1481513 GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1481454 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||| ||||| | || | || || |||||| Sbjct 1481453 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAAC 1481394 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || ||||| | ||| | || ||||| || Sbjct 1481393 ATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1481344 >seq34 Length=2241197 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || ||||| |||||||| | ||||||||| | || Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || || | ||||||||||| ||||||||||| ||||| || || |||||||| Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||||||||| | ||| | || |||||||| Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || ||||| ||||| || ||| | || ||||| Sbjct 1643066 ATTCAAAAGGAATCAACATTACACTTGGTATTACGTCTACGAGGTGG 1643112 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||||| ||||||||| | |||||||| ||||| ||| | || Sbjct 1642657 CATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCTTC 1642716 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || || || || | ||||| ||||||||||||||||| ||||| || || || ||||| Sbjct 1642717 TGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCA 1642776 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || | || | ||| || || ||||| ||||| | || | || || ||||| Sbjct 1642777 ACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTACAA 1642836 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | |||||||| | ||| | || ||||| || Sbjct 1642837 CATTCAAAAGGAATCTACACTTCATTTGGTGCTTCGTCTTCGTGGTGGTAT 1642887 >seq15 Length=645780 Score = 123 bits (136), Expect = 2e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 |||||||| ||||| | || || |||||||| ||||| || ||||| || || || ||| Sbjct 322378 TCCGACTCCATTGACAATGTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGAT 322319 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| || || ||||||||||| | ||| |||| || ||| Sbjct 322318 CAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACCCTTTCTGACTAC 322259 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | ||||||||| | ||| | || ||||| || Sbjct 322258 AACATCCAAAAGGAATCCACTCTCCATTTGGTTCTCCGTCTTCGTGGTGGTAT 322206 >seq22 Length=518773 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||| || || | ||||| |||||||| |||||||| ||||| || || || ||| Sbjct 75752 TCTGACTCTATCGACAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGAT 75811 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | || || || ||||||||||| || || | || || ||| Sbjct 75812 CAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGACTAC 75871 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 75872 AACATCCAAAAGGAATCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGTAT 75924 >seq5 Length=1173598 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || |||||||| || | ||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 909212 TCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGAT 909271 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| || || ||||||||||| | || | || || ||| Sbjct 909272 CAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTAC 909331 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 909332 AACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 909384 >seq56 Length=2073579 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||| ||||| | ||||| |||||||| |||||||| ||||| || || || || Sbjct 1295481 TCTGACTCTATTGACAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGAC 1295540 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || || || || | ||| || || ||||||||||| | || | || || ||| Sbjct 1295541 CAGCAACGCTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTAC 1295600 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 1295601 AACATCCAAAAGGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 1295653 >seq8 Length=1007018 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||| || || | ||||| |||||||| ||||| || ||||| || || || || Sbjct 757658 TCTGACTCTATCGACAACGTCAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGAC 757599 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||||| || | ||| || || ||||||||||| | || | || || ||| Sbjct 757598 CAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTAC 757539 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || ||| | || ||||| | ||| | || ||||| || Sbjct 757538 AACATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 757486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917888970880