Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq67 114 9e-21 seq34 104 2e-17 seq22 100 2e-16 seq15 91.5 1e-13 seq56 86.0 4e-12 seq5 84.2 2e-11 >seq67 Length=1953875 Score = 114 bits (126), Expect = 9e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | ||||| || |||||| | || || ||| | Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || |||||||| || ||||| |||||| |||| || | Sbjct 1415604 GACTCTATCGACAAT--GTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACC 1415547 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || ||||| ||||| || |||||||| || | || | ||||| ||||||| Sbjct 1415546 AGCAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACA 1415487 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | |||||||| | ||| | ||||| || Sbjct 1415486 ACATCCAAAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGTGGTGG 1415438 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || ||||||| | || || |||||| | Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || |||||||| || ||||| |||||| | || || | Sbjct 1481285 GACTCAATTGACAAT--GTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATC 1481228 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||| || || |||||||| || | |||| | || ||||||| Sbjct 1481227 AACAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACA 1481168 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | |||||||| | ||| | ||||| || Sbjct 1481167 ACATCCAAAAGGAATCTACTCTTCATTTGGTGCTCCGTCTCCGTGGTGG 1481119 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||||||||||| || ||||| | || || ||| | Sbjct 1416351 AACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCC 1416292 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| |||||||||||||| || || |||||| |||| | Sbjct 1416291 TCCGACTCCATTGACAAT--GTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAG 1416234 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | || ||||| || ||||||||||| || | || | | || || | Sbjct 1416233 ACCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACT 1416174 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || ||| | || ||||| | ||| | ||||| || Sbjct 1416173 ACAACATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1416122 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || ||||| |||||||| || ||||| | || || ||| | Sbjct 1481804 AACATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCC 1481745 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || | ||| || || |||||||| ||||| |||||| |||| | Sbjct 1481744 TCCGACTCCATCGATAAT--GTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCG 1481687 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | || |||||||| ||||| ||||| || | |||| | || || | Sbjct 1481686 ACCAACAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACT 1481627 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 1481626 ACAACATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1481575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | ||||| || |||||| | || || ||| | Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || ||||| || || || |||||| |||| || | Sbjct 1415832 GACTCTATCGACAAT--GTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATC 1415775 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || || |||||||| || | |||| | || || |||| Sbjct 1415774 AGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACA 1415715 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 1415714 ACATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1415666 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | ||||| || |||||| | || || ||| | Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || ||||| || || || |||||| |||| || | Sbjct 1416060 GACTCTATCGACAAT--GTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATC 1416003 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||| || || |||||||| || | |||| | || || |||| Sbjct 1416002 AGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACA 1415943 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || ||||| | ||| | ||||| || Sbjct 1415942 ACATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1415894 >seq34 Length=2241197 Score = 104 bits (114), Expect = 2e-17 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || ||||| || ||| |||||| | || || ||| | | Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||||||||| || ||||| |||||| | || || | Sbjct 1642946 GACTCTATCGACAAC--GTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATC 1643003 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || ||||| || || |||||||| || | || | ||| || ||||||| Sbjct 1643004 AGCAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACA 1643063 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACGA 28022 | || ||||| || || || || ||||| || ||| | || || || ||||| Sbjct 1643064 ATATTCAAAAGGAATCAACATTACACTTGGTATTACGTCTACGAGGTGGTGACGA 1643118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| || |||||||| || || ||||| | || || ||| Sbjct 1642655 AACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCT 1642714 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| ||||| |||||||| ||||| ||||| |||| | Sbjct 1642715 TCTGATTCAATCGATAAT--GTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTG 1642772 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| | ||||| || ||||| ||||| || || | | | | || || || | Sbjct 1642773 ATCAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACT 1642832 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || || | |||||||| | ||| | ||||| || Sbjct 1642833 ACAACATTCAAAAGGAATCTACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 1642884 >seq22 Length=518773 Score = 100 bits (110), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || Sbjct 75765 ACAAT--GTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGATCAGCAACGTTT 75822 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 |||||||| || || |||||||| || | |||| ||||| || |||||||||||||| Sbjct 75823 GATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGACTACAACATCCAAAA 75882 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||| | || ||||| | ||| | ||||| || Sbjct 75883 GGAATCCACCCTCCACTTGGTCCTCCGTCTCCGTGGTGG 75921 >seq15 Length=645780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| || || |||||||| || || |||||| |||| || |||||||| || Sbjct 322365 ACAAT--GTGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAGCAACGTTT 322308 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 ||||| || || || |||||||| || | || | | | || || |||||||||||||| Sbjct 322307 GATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACCCTTTCTGACTACAACATCCAAAA 322248 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| | ||||||||| | ||| | ||||| || Sbjct 322247 GGAATCCACTCTCCATTTGGTTCTCCGTCTTCGTGGTGG 322209 >seq56 Length=2073579 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || Sbjct 1295494 ACAAT--GTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGCTT 1295551 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 ||||| || || || |||||||| || | || | | || || |||||||||||||| Sbjct 1295552 GATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAA 1295611 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||| | || ||||| | ||| | ||||| || Sbjct 1295612 GGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 1295650 >seq5 Length=1173598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 27852 CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCA 27911 |||| ||||| ||||| ||||| || ||||| |||||| |||| || ||||| Sbjct 909219 CGATCGACAAT--GTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCA 909276 Query 27912 ACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACAT 27971 ||| || ||||| || || || |||||||| || | || | | || || |||||||| Sbjct 909277 ACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTACAACAT 909336 Query 27972 CCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || |||| | || ||||| | ||| | ||||| || Sbjct 909337 CCAAAAGGAATCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 909381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861992315138