Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq67 167 5e-36 seq34 154 3e-32 seq56 145 2e-29 seq5 141 2e-28 seq15 136 9e-27 seq8 136 9e-27 seq22 125 2e-23 >seq67 Length=1953875 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || || || ||||| ||||| || |||| | || Sbjct 1480896 ACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGT 1480955 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| || || ||||| | ||||||||||| ||||| | || Sbjct 1480956 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACC 1481015 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || |||||||||||||| || || || | |||||||||||| || || || Sbjct 1481016 TTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAG 1481075 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| ||||| | ||||| Sbjct 1481076 AGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| || || ||||||||||| ||||| | ||| || | |||||||||| ||| Sbjct 1481143 TGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGC 1481202 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || |||||||| || ||||| | ||||||||||| || |||||| Sbjct 1481203 TTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTT 1481262 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||||||| || || || | |||||||||||| || || | || || ||||| || || Sbjct 1481263 TGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTGCCAGTC 1481322 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 1481323 AAGGTCTTCACAAAGATTTGCAT 1481345 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || ||||| || || ||||||||||| ||||| | | || Sbjct 1415443 ACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGT 1415502 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||||| || ||||| || | ||||| ||||||||||||| || Sbjct 1415503 ACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACC 1415562 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||||||||| || || ||||| | |||||| ||| || || || Sbjct 1415563 TTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAG 1415622 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || | |||||| ||||| | ||||| Sbjct 1415623 AGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||||||||| || || | || || | |||||| Sbjct 1481590 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481649 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| || ||||||||||| ||||||| ||||||||||| Sbjct 1481650 TCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCT 1481709 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||||| ||||| || ||||||| ||| ||| ||| || || | || || ||| Sbjct 1481710 TGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1481769 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || | ||||| || Sbjct 1481770 TTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTT 1481804 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| ||||| || || | ||| || | |||||| Sbjct 1416137 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCT 1416196 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| || ||||||||||| ||||||| |||||||| || Sbjct 1416197 TCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCT 1416256 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| |||||||| || || || |||| ||| ||| ||| || || | || || ||| Sbjct 1416257 TGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1416316 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || |||||||| || || | ||||| || Sbjct 1416317 TTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| ||||| || || | || || | |||||| Sbjct 1481362 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481421 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | || || || || || || | ||||| || |||||||||| ||||||||||| Sbjct 1481422 TCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 1481481 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||||||||| || ||||| | |||||||||||| || || | || || ||| Sbjct 1481482 TGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTC 1481541 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | ||||| Sbjct 1481542 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||||||||| || || | || || | |||||| Sbjct 1415681 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415740 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || || || | ||||| || || || |||| |||||||| || Sbjct 1415741 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1415800 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| ||||| || ||||| | |||||| ||| || || ||||| || ||| Sbjct 1415801 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1415860 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| ||||| | ||||| Sbjct 1415861 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||||||||| || || | || || | |||||| Sbjct 1415909 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415968 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || || || | ||||| || || || |||| |||||||| || Sbjct 1415969 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1416028 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| ||||| || ||||| | |||||| ||| || || ||||| || ||| Sbjct 1416029 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1416088 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| ||||| | ||||| Sbjct 1416089 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 >seq34 Length=2241197 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || || || ||||| ||||| || |||| | || Sbjct 1642879 ACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGT 1642820 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||||| | ||||| || ||||| || || |||||||| ||||| |||| ||| Sbjct 1642819 TCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCC 1642760 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || ||||| || || || ||||| | ||||| ||| || || || Sbjct 1642759 TTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAG 1642700 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || ||||| || || |||||||| ||||| | ||||| || Sbjct 1642699 AGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| || || ||||| | | ||| | |||||||||| ||||| || Sbjct 1643082 GTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCA 1643023 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || ||||| || || ||||| | ||||||||||| || ||||||||||| Sbjct 1643022 GCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTG 1642963 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| | ||||||| ||| || || | ||| || || || || || || ||| Sbjct 1642962 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTC 1642903 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 1642902 TTGACAAAGATTTGCAT 1642886 >seq56 Length=2073579 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | ||| || | ||||| | |||||||||||| || Sbjct 1295671 TTCAAGGAGGG-TTCGATGATACCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTC 1295613 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| || || | || || | |||||||||| ||||| || ||||| || Sbjct 1295612 CTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTGCTTACCAGCGAAAAT 1295553 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | |||||| ||||||||||||| ||||||||||| ||||| ||||| || || || || Sbjct 1295552 CAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTGACATTGTC 1295493 Query 211046 GATGGTGTCAGAGCT 211060 || | ||||||||| Sbjct 1295492 AATAGAGTCAGAGCT 1295478 >seq5 Length=1173598 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | ||| || | ||||| | |||||||||||| || Sbjct 909402 TTCAAGGAGGG-TTCGATGATACCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTC 909344 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| || || | || || | |||||||||| ||||| || ||||| || Sbjct 909343 CTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTGCTTACCAGCGAAAAT 909284 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | ||||| || |||||||||| ||||||||||| || |||||||| || || || || Sbjct 909283 CAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTTGACATTGTC 909224 Query 211046 GATGGTGTCAGAGCT 211060 ||| | ||||||||| Sbjct 909223 GATCGAGTCAGAGCT 909209 >seq15 Length=645780 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | |||||| | || || | || |||||||| || Sbjct 322188 TTCAAGGAGGG-TTCGATGATACCACCACGAAGACGGAGAACCAAATGGAGAGTGGATTC 322246 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| || || | |||||| | |||||||||| ||||| || ||||| || Sbjct 322247 CTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCTTCCAATTGCTTACCAGCGAAAAT 322306 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | ||||| || |||||||||| |||||||| || ||||| ||||| ||||| || || Sbjct 322307 CAAACGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTCACATTGTC 322366 Query 211046 GATGGTGTCAGAGCT 211060 |||| ||| ||||| Sbjct 322367 AATGGAGTCGGAGCT 322381 >seq8 Length=1007018 Score = 136 bits (150), Expect = 9e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| ||||| || ||||||||||| || || | || || | |||||| Sbjct 757504 AGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 757563 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||| || | ||||| ||||||||||||| |||||||| || Sbjct 757564 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT 757623 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||| ||||| || ||||| ||||| | ||||||||| Sbjct 757624 TGGATTTTTTGCTTGACGTTGTCGATAGAGTCAGAGCT 757661 >seq22 Length=518773 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | ||| || | ||||| | ||| || ||||| || Sbjct 75942 TTCAAGGAGGG-TTCGATGATACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTC 75884 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| || || | | || | |||||||||| ||||| || || || || Sbjct 75883 CTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAAT 75824 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | ||||| || |||||||||| ||||||||||| ||||| ||||| || || || || Sbjct 75823 CAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTGACATTGTC 75764 Query 211046 GATGGTGTCAGAGCTTTCAAC 211066 ||| | ||||||||| | ||| Sbjct 75763 GATAGAGTCAGAGCTATAAAC 75743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150603946310