Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq67 116 3e-21 >seq67 Length=1953875 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 23598 TTAATTACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCG 23656 || ||| || ||| ||||| ||||||||||||||||| || || || || || || | | Sbjct 1481815 TTTATTTCTCAAACATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGG 1481756 Query 23657 AAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 |||| || ||| | ||| | | || | | || |||||||| ||||| |||||| Sbjct 1481755 AAGTGGAATCCTCCGACTCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTA 1481696 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || || || ||||| ||| | || |||||||| ||||| ||||||| | |||||| Sbjct 1481695 TTCCTCCCGACCAACAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTC 1481636 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCAC 23807 | || |||||||| ||||| || || || Sbjct 1481635 TCTCTGACTACAACATCCAAAAGGAATCTAC 1481605 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 23601 ATTACTTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||||||| || ||||| |||||||| || || || || || || || || || | |||| Sbjct 1416359 ATTACTTCAACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAG 1416300 Query 23660 TTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTAC 23719 | || ||| | ||| | |||| | | ||||||||||| || || |||||| | | Sbjct 1416299 TGGAATCCTCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTC 1416240 Query 23720 CGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAG 23779 | ||||| ||||| ||| | || ||||| || |||||| ||||||| | || ||| | Sbjct 1416239 CTCCAGACCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTT 1416180 Query 23780 GCGATTACAACATACAAAAAGAGTCCAC 23807 || |||||||| ||||| || || || Sbjct 1416179 CTGACTACAACATTCAAAAGGAATCTAC 1416152 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || || || || || ||||| ||||| || || | Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || | || ||| ||||| ||||| ||| ||||| |||||| | || || || || Sbjct 1415604 GACTCTATCGACAATGTTAAA-CAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCA 1415546 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||||| || || ||||| || ||| ||||||| | || ||||| |||||||| Sbjct 1415545 GCAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAA 1415486 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || || || | ||||| || Sbjct 1415485 CATCCAAAAGGAATCGACTCTCCATTTGGT 1415456 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||| | || || || || || || | ||||| || | | Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | |||| | | |||||||| ||| ||||| |||||| | || || |||||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||| ||||||| | |||||| | ||||||||| Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1481166 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || || | ||||| || Sbjct 1481165 ATCCAAAAGGAATCTACTCTTCATTTGGT 1481137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009212767752