Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq67 181 3e-40 seq34 149 1e-30 seq22 132 1e-25 seq56 129 1e-24 seq5 129 1e-24 seq15 123 6e-23 seq8 120 7e-22 >seq67 Length=1953875 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 1481590 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481649 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || || ||||| || |||||||||||||| |||||||||||||||||| Sbjct 1481650 TCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCT 1481709 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| |||||||||||| ||||||| ||| |||| |||||| || || || || ||| Sbjct 1481710 TGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1481769 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||||| | ||| | |||||| || Sbjct 1481770 TTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTT 1481804 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||||| ||||| ||||||| |||||||| | |||||| Sbjct 1415443 ACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGT 1415502 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || ||||| || | ||||| ||||| || |||||||| Sbjct 1415503 ACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACC 1415562 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||||| || ||| ||||| | ||| || | |||||| || | Sbjct 1415563 TTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAG 1415622 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||||||| || | || | |||||| Sbjct 1415623 AGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 163 bits (180), Expect = 7e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||| ||||||| |||||||| | | ||| | |||||||| | ||| Sbjct 1481143 TGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGC 1481202 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || |||||||| ||||| || ||||||||||||||||| |||||| Sbjct 1481203 TTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTT 1481262 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || |||||| || || | ||| ||| ||||||| || || || || |||||||| ||| Sbjct 1481263 TGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTGCCAGTC 1481322 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | || | |||||| Sbjct 1481323 AAGGTCTTCACAAAGATTTGCAT 1481345 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || ||||| ||||| | ||||| || | |||||| Sbjct 1480896 ACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGT 1480955 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| ||||| ||||| | ||||||||||||||| || ||||| Sbjct 1480956 GCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACC 1481015 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||||| |||||| || || | ||| ||| ||||||| || | Sbjct 1481016 TTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAG 1481075 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||| ||| || | || | |||||| Sbjct 1481076 AGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||| | ||||| || | | ||| | |||||| Sbjct 1416137 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCT 1416196 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||| ||||| || ||||||||||| || |||||||||||||| ||| Sbjct 1416197 TCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCT 1416256 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| ||||| || ||| || |||| ||| |||| |||||| || || || || ||| Sbjct 1416257 TGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1416316 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||| || | ||| | |||||| || Sbjct 1416317 TTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 1415681 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415740 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | ||||| || ||||| |||||||||||||| ||| Sbjct 1415741 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1415800 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||||||| ||||| | ||| || | |||||| || | || || ||| Sbjct 1415801 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1415860 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || | |||||| Sbjct 1415861 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 1415909 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415968 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | ||||| || ||||| |||||||||||||| ||| Sbjct 1415969 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1416028 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||||||| ||||| | ||| || | |||||| || | || || ||| Sbjct 1416029 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1416088 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || | |||||| Sbjct 1416089 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||| | ||||| || | | ||| | |||||| Sbjct 1481362 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481421 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||| || || | ||||| || || || |||||||||||||||||| Sbjct 1481422 TCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 1481481 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||||| |||||| ||||| | ||| ||| ||||||| || || || || ||| Sbjct 1481482 TGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTC 1481541 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || | |||||| Sbjct 1481542 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 >seq34 Length=2241197 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || ||||| ||||| | ||||| || | ||||| Sbjct 1642879 ACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGT 1642820 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||||| ||||| |||||||| || ||||||||||| || || ||||| || Sbjct 1642819 TCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCC 1642760 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| || |||||||| ||| ||||| | || || | ||| || || | Sbjct 1642759 TTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAG 1642700 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||||||| || | ||| || | || | |||||| || Sbjct 1642699 AGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||| | ||||||||| | || || | ||||||||| | ||||||||| Sbjct 1643082 GTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCA 1643023 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || ||||| || ||||| || ||||||||||||||||| |||||||| || Sbjct 1643022 GCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTG 1642963 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| |||| |||||| || || || || || ||||| || | || Sbjct 1642962 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTC 1642903 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 1642902 TTGACAAAGATTTGCAT 1642886 >seq22 Length=518773 Score = 132 bits (146), Expect = 1e-25 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| ||||||| ||||| || | |||||| | |||||| Sbjct 75906 AGGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCT 75847 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | ||||| || || || |||||||||||||||||| Sbjct 75846 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 75787 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||||| |||||||| ||| ||||| | ||| ||| Sbjct 75786 TGGATTTTTTGCTTGACATTGTCGATAGAGTCAGAG 75751 >seq56 Length=2073579 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||| ||||||| ||||| || | | ||| | |||||| Sbjct 1295635 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 1295576 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| ||||| || |||||||||||||||||| Sbjct 1295575 TCCAATTGCTTACCAGCGAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 1295516 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||||| |||||||| ||| || || | ||| ||| Sbjct 1295515 TGGATTTTTTGCTTGACATTGTCAATAGAGTCAGAG 1295480 >seq5 Length=1173598 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||| ||||||| ||||| || | | ||| | |||||| Sbjct 909366 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 909307 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| || || || |||||||||||||||||| Sbjct 909306 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 909247 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || ||||||||||| ||| ||||| | ||| ||| Sbjct 909246 TGAATCTTTTGCTTGACATTGTCGATCGAGTCAGAG 909211 >seq15 Length=645780 Score = 123 bits (136), Expect = 6e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | |||||||||||||| ||||||| ||||| || | | || Sbjct 322214 ACGAAGACGGAGAACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGT 322273 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| |||||||| || | ||||| || || || |||||||| Sbjct 322274 ACGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACC 322333 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 |||||| |||||||| |||||||||||| || |||| ||| ||| Sbjct 322334 TTCCTTATCTTGGATTTTTTGCTTCACATTGTCAATGGAGTCGGAG 322379 >seq8 Length=1007018 Score = 120 bits (132), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || |||||||| ||||||| ||||| || | | ||| | |||||| Sbjct 757504 AGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 757563 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| ||||| || |||||||||||||| ||| Sbjct 757564 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT 757623 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||||| |||||||| || ||||| | ||| ||| Sbjct 757624 TGGATTTTTTGCTTGACGTTGTCGATAGAGTCAGAG 757659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529763745236