Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq67 95.1 1e-14 seq34 89.7 4e-13 >seq67 Length=1953875 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||| | ||| ||||| |||||||| ||||| || | | ||| | |||||| Sbjct 1416139 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1416198 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||||||||| || ||| | || || | |||||||||| || | ||||| || || Sbjct 1416199 CAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 1416258 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||||||||||| |||| | | | | || | ||| ||| | |||||| || || Sbjct 1416259 GATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1416318 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| || | || || | ||||||||||| Sbjct 1416319 GCCAGTAAGAGTCTTGACGAAAATTTGCAT 1416348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||| | ||| ||||| ||||| || ||||| || | | ||| | |||||| Sbjct 1481592 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481651 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||| ||||| || ||| | || || | ||||||||| || | ||||| ||||| Sbjct 1481652 CAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTG 1481711 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 |||||||| ||||||| | | | || | ||| ||| | |||||| || || Sbjct 1481712 GATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1481771 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| || | ||||||| ||||||||||| Sbjct 1481772 GCCAGTAAGGGTTTTAACGAAAATTTGCAT 1481801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | ||| ||||| ||||| || |||||||| | | ||| | |||||| Sbjct 1481136 CACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1481195 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || || | |||||| || || | ||||| ||||| Sbjct 1481196 CAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 1481255 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||||||||||||| | | | | || | | | || ||| | |||||||| Sbjct 1481256 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAG--CTTTCCACTTCCAATGTAATAGTC 1481313 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||| || || | ||| |||||||| Sbjct 1481314 TTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | || ||||| |||||||| ||||| || | || ||| | |||||| Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTC 1480967 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || | | ||||||||| || | ||||| ||||| Sbjct 1480968 CAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTG 1481027 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||||||||||||| | | | | || | | | || ||| | |||||||| Sbjct 1481028 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAG--CTTTCCACTTCCAGAGTAATAGTC 1481085 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| |||| || || | ||| |||||||| Sbjct 1481086 TTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||| | ||| ||||| |||||||| ||||| || | | ||| | |||||| Sbjct 1481364 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481423 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||||| || ||| | || | | ||| || || || | ||||| ||||| Sbjct 1481424 TAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTG 1481483 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||||||||||||| | | | | || | | | || ||| | |||||||| Sbjct 1481484 AATCTTTTGTTTCACATTGTCGATAGAGTCAGAG--CTTTCCACTTCCAATGTAATAGTC 1481541 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||| || || | ||| |||||||| Sbjct 1481542 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| || | ||| ||||| ||||| || |||||||| | || ||| | |||||| Sbjct 1415455 CACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTC 1415514 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || || | || | | ||| ||||| || | ||||| ||||| Sbjct 1415515 CAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTG 1415574 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||| |||||||| |||| | | | | || | || ||| | |||||||| || Sbjct 1415575 AATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415634 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| ||||| || || | ||| |||||||| Sbjct 1415635 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 >seq34 Length=2241197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||| | | ||| |||| ||| || |||||||| ||||||||||||||||| | Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || |||||||||||| || || ||| | || || | ||| || || || Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||| ||||| ||| |||||||| || | | | | | || | ||| | Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||||||||| || | || || | ||| |||||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409660330682346