Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 172 5e-38 >seq1 Length=3895514 Score = 172 bits (190), Expect = 5e-38 Identities = 348/514 (68%), Gaps = 7/514 (1%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || ||||| || || ||||| ||||| || |||||||||| | || || | || Sbjct 3275036 TTGATAATCGGAGACACGTTTTTCAAAGAAGTTGGTTTTGCCTTGAAGGGAGATCATATC 3274977 Query 4319 CATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAA 4378 ||| || ||||| |||||||| | ||||||||| || || ||||| || | | Sbjct 3274976 CATGAAGTCAAAGGGATTAGTGGAGTTGTAATGCTTATCTTGACCAAGAGCAACCAAGAG 3274917 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || || || |||||||| || || |||| ||| || | | |||| || ||||| | Sbjct 3274916 ACGATCGGCGACAAATTCAATGTATTGGCACATAAGCTTGGAGTTCATACCAATAAGAGC 3274857 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 ||||| || || | |||||||| |||||||| || | || ||||| || || || Sbjct 3274856 AACAGGGAGAGCATCCGTCAAAAATTCTTGTTCAATGGCAACAGCTTCCACAATGATTTC 3274797 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTAT--CCAAACAATAAACACGCAAAA 4556 | ||| | |||| || | | ||| |||||||||||||| ||||| Sbjct 3274796 ACGCACACGATCACTGCTAGGTTGATGA--TGAATATGACCAAACAATAAACAAGCAAAG 3274739 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 ||| || | ||||||||| | | |||| ||| || || || || || || ||||| Sbjct 3274738 TCAGTGTGAAGACCTTCGTCACGACAGATCAATTCATTGGAGAAGGTCAAACCAGGCATC 3274679 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 ||||| | || || ||||| || || | |||||| | ||||| ||||| || ||||| Sbjct 3274678 AAACCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCTTCC 3274619 Query 4677 ACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTT 4736 || || ||||| || || | || | || || | ||| | | |||||| Sbjct 3274618 ACAGCAGCAAAGGCCACAAGACGTTCAGCAAATGA---TTCATTGCCACTGATCCATCGG 3274562 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAA 4770 || ||||| | ||| |||||||||| || |||| Sbjct 3274561 AAAGCCCAATCAGCCTTTTTCTTAATACAAGGAA 3274528 Score = 134 bits (148), Expect = 1e-26 Identities = 210/293 (72%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 4799 TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858 |||||||| ||||| | ||||||||||| || | || ||||| |||||| ||| || Sbjct 3274365 TTTTTCAACAGGGTCCTTGATATAAGTGTCAATCAATAAACTATAAGTTTCAGCATGAAT 3274306 Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA-CTTGAACTTCGT 4917 |||||| || || || ||||| ||||||||| | ||||| | | ||||| |||| | Sbjct 3274305 ATTTTCAATCATGATTTGGAATCCATAAAAGCATTTGGCTTCAGCGATCTTGA-CTTCAT 3274247 Query 4918 TACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT-GCAAAAAACGCC 4976 ||| ||| || ||||||||||| || ||||| || | ||| ||||| || ||| Sbjct 3274246 CCATAAAGTTTTGCACCAAGTTTTCGTTGACAATACCATC-CGAGCTAGCAAAGAAAGCC 3274188 Query 4977 AAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAA 5033 || |||||||| |||||| | ||||||| || | | |||| ||||| | Sbjct 3274187 AACACATGAGAGATAAAGAAACGTTCGTCGTTGTTCATTTTGTTTTCCCAGTCATTAGTA 3274128 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTC-CGCTTTTT 5085 || || | | |||| ||||||| ||||||| || || ||||| ||||||| Sbjct 3274127 TCCTTGGAGAGGTCAATTTCTTCAGCAGTCCAGAAAGAAGCTTCGTGCTTTTT 3274075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049110761302