Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq34 143 6e-29 seq67 131 4e-25 seq56 89.7 1e-12 >seq34 Length=2241197 Score = 143 bits (158), Expect = 6e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 1642869 AGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCT 1642810 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 |||| ||||| || ||||| || || | || || || | | ||||||||||| | Sbjct 1642809 TCTAATTGCTTT--CCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGT 1642752 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||||||||| |||||| | || | || ||| |||||||| |||||||| | Sbjct 1642751 CTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGG 1642692 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || |||||||| || || | ||||| || Sbjct 1642691 TCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || ||||| || |||||||| | ||| || | ||||||||| | ||||| Sbjct 1643082 GTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCA 1643023 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| || | ||||| || | | ||| |||||||| |||||||| ||||||||| Sbjct 1643022 GCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTG 1642963 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || ||||| | ||||||||||||||| || || ||| Sbjct 1642962 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTC 1642903 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 1642902 TTGACAAAGATTTGCAT 1642886 >seq67 Length=1953875 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || || ||||| |||||||| || | ||||| | |||||| Sbjct 1480906 AGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCT 1480965 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | || ||||| | | ||| |||||||| ||| Sbjct 1480966 TCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCT 1481025 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| |||||||| ||| | || | ||| || || || ||||| ||||||||||| Sbjct 1481026 TGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTC 1481085 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||||||||| |||| ||||| Sbjct 1481086 TTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||| || ||||||||||||||||| | | ||| | Sbjct 1481127 GAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCG 1481186 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || || ||||| || | || || || | | ||| ||||| Sbjct 1481187 GCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTC 1481246 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| |||||||| ||| | || | ||| || || || ||||| | || Sbjct 1481247 CTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGT 1481306 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || | |||||||| |||| ||||| Sbjct 1481307 AATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| || || ||||||||||||||||| | ||||| | |||||| Sbjct 1415453 AGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCT 1415512 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || |||||||| || | | |||||||| | | || |||||||| ||| Sbjct 1415513 TCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 1415572 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| |||||||| ||| | || | ||| || || ||||| ||||||||||| Sbjct 1415573 TGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1415632 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| ||||| Sbjct 1415633 TTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || ||||| |||||||| || | | ||| | Sbjct 1416130 GAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACG 1416189 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| || || ||||| || | || ||||| | | || ||||| Sbjct 1416190 GCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTC 1416249 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| ||||||||||||||| | || | | ||| || || ||||| | || Sbjct 1416250 CTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGT 1416309 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || ||||| || |||||||| ||||| | ||||| || Sbjct 1416310 AATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || |||||||||||||| || | | ||| | Sbjct 1481583 GAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCG 1481642 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| ||||| ||||| || | || ||||| | | || ||||| Sbjct 1481643 GCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTC 1481702 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| |||||||| || ||| | || | | ||| || || ||||| | || Sbjct 1481703 CTTGTCTTGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGT 1481762 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || ||||| || || || || ||||| | ||||| || Sbjct 1481763 AATGGTCTTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTT 1481804 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || ||||| |||||||| || | | ||| | Sbjct 1481355 GAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCG 1481414 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||||| ||| || || || || | | ||||| || | | || ||||| Sbjct 1481415 GCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTC 1481474 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| |||||||| ||| | || | ||| || || || ||||| | || Sbjct 1481475 CTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGT 1481534 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || | ||||| || |||| ||||| Sbjct 1481535 AATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || |||||||||||||| || | | ||| | Sbjct 1415674 GAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCG 1415733 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || || || || | | ||||| || | | || ||||| Sbjct 1415734 GCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTC 1415793 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| ||||| || ||| | || | ||| || || ||||| ||||| Sbjct 1415794 CTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGT 1415853 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || | |||||| || |||| ||||| Sbjct 1415854 AATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || |||||||||||||| || | | ||| | Sbjct 1415902 GAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCG 1415961 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || || || || | | ||||| || | | || ||||| Sbjct 1415962 GCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTC 1416021 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| ||||| || ||| | || | ||| || || ||||| ||||| Sbjct 1416022 CTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGT 1416081 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || | |||||| || |||| ||||| Sbjct 1416082 AATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 >seq56 Length=2073579 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||||| || || |||||||||||||| || | | ||| | Sbjct 1295642 GAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACG 1295583 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| | || || ||||| || |||| | |||||||| | | || |||| Sbjct 1295582 GCCATCTTCCAATTGCTTACCAGCGAAAATCAAGCGT-TGCTGGTCAGGAGGAATACCTT 1295524 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACA 152030 |||| ||||| |||||||| |||||| Sbjct 1295523 CCTTGTCTTGGATTTTTTGCTTGACA 1295498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819410367074