Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 seq4 120 3e-22 >seq1 Length=3895514 Score = 161 bits (178), Expect = 1e-34 Identities = 354/526 (67%), Gaps = 11/526 (2%) Strand=Plus/Minus Query 23160 TTAAAAATCTTCATCTAAAGTGAATTTCACTGCTTTATCACTATT---CATAACACCCAT 23216 ||| ||||| |||| |||||||| ||| | ||| | | || ||| ||||| Sbjct 3275099 TTAGAAATCGGCATCCAAAGTGAAGTTCTTTTCTTCAGGGGTTTTGTTCATGACACCAGC 3275040 Query 23217 TTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 |||||| || |||||| |||| || || || || || || | | || || | Sbjct 3275039 ACGTTGATAATCGGAGACACGTTTTTCAAAGAAGTTGGTTTTGCCTTGAAGGGAGATCAT 3274980 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATA-TAC--AGCTTTAC-ATGATAATTCCT 23332 ||||| || ||||| ||||||| | || || | | | ||| || | || | | Sbjct 3274979 ATCCATGAAGTCAAAGGGATTAGTGGAGTTGTAATGCTTATCTTGACCAAGAGCAACC-- 3274922 Query 23333 TTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTA 23392 || || | ||| || ||||||||||| ||||| ||||| | | |||| ||||| | Sbjct 3274921 --AAGAGACGATCGGCGACAAATTCAATGTATTGGCACATAAGCTTGGAGTTCATACCAA 3274864 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAA 23452 | || || || | ||||| || ||| || |||||||| |||||| || || Sbjct 3274863 TAAGAGCAACAGGGAGAGCATCCGTCAAAAATTCTTGTTCAATGGCAACAGCTTCCACAA 3274804 Query 23453 TTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATG 23512 | |||| | | | || |||||| ||| | | || |||||||||||| | Sbjct 3274803 TGATTTCACGCACACGATCACTGCTAGGTTGATGATGAATATGACCAAACAATAAACAAG 3274744 Query 23513 CAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTG 23572 |||| ||| || || ||||| || | || ||||||||||| || || || || || | Sbjct 3274743 CAAAGTCAGTGTGAAGACCTTCGTCACGACAGATCAATTCATTGGAGAAGGTCAAACCAG 3274684 Query 23573 GCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATAC 23632 |||| || || ||||| || | ||| || || | ||||| | || || ||||| |||| Sbjct 3274683 GCATCAAACCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATAC 3274624 Query 23633 CCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 | || ||||| |||||||||||||||||| | |||||| | |||| Sbjct 3274623 CTTCCACAGCAGCAAAGGCCACAAGACGTTCAGCAAATGATTCATT 3274578 Score = 129 bits (142), Expect = 6e-25 Identities = 224/319 (70%), Gaps = 15/319 (5%) Strand=Plus/Minus Query 23721 TACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTT-TTCTTCATTA---TCTG 23776 |||| ||| | | |||||||| || | || | |||||| || |||| | || Sbjct 3274404 TACAAACTTACTGGTTTCAATGGCATCAAACA----AGTTTTCTTTTTCAACAGGGTCCT 3274349 Query 23777 TTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCT 23836 | ||||| || ||||| | ||||||||| |||||| ||||||||||||||| || | Sbjct 3274348 TGATATAAGTGTCAATCAATAAACTATAAGTTTCAGCATGAATATTTTCAATCATGATTT 3274289 Query 23837 GAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTA 23896 | || |||||||| ||| | ||||||| | | || |||| | ||| ||| | | Sbjct 3274288 GGAATCCATAAAAGCATTTGGCTTCAGCGATCTTGACTTCATCCATAAAGTTTTGCACCA 3274229 Query 23897 AATTTTCGTTAACAATACCATCACTAGC-AGCAAAGAAAGCAAGAACATATTTTATAAAA 23955 | |||||||| ||||||||||| | ||| |||||||||||| | |||| ||||| Sbjct 3274228 AGTTTTCGTTGACAATACCATC-CGAGCTAGCAAAGAAAGCCAACACATGAGAGATAAAG 3274170 Query 23956 TGTCTTTCATCAGTTGATAAT----TTTTTCCAATCATTAATATCTTTTGATAAATCAAC 24011 | ||| || |||| | || |||| ||| |||||| |||| || || | |||| Sbjct 3274169 AAACGTTCGTC-GTTGTTCATTTTGTTTTCCCAGTCATTAGTATCCTTGGAGAGGTCAAT 3274111 Query 24012 TTCATCAACTGTCCAAAAA 24030 ||| ||| | ||||| ||| Sbjct 3274110 TTCTTCAGCAGTCCAGAAA 3274092 >seq4 Length=1266665 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 |||||| | |||||||| ||| ||| || ||||| || | ||| |||| |||||| || Sbjct 714894 AAACAAAAGGCATGCAAAGTCAGTATGGAGACCTTCGTCACGACTGATCAGTTCATTGGA 714835 Query 23559 AAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 ||||| || || ||||| || || ||||| || | ||| || || | ||||| | || Sbjct 714834 GAATGTCAACCCAGGCATCAAACCACGTTTCTTGAGCCAGAAGATAGAGGCAAAGGCACC 714775 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 ||||||||| || || || ||||| || || || ||||||||| | |||||| | | || Sbjct 714774 GGAAAAGAAGATGCCTTCCACAGCAGCGAAAGCAACAAGACGTTCAGCAAATGATTCGTT 714715 Query 23679 A 23679 | Sbjct 714714 A 714714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487387251600