Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq67 141 7e-29 seq34 120 2e-22 seq5 87.8 1e-12 >seq67 Length=1953875 Score = 141 bits (156), Expect = 7e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || ||||||||||||||||| || | ||| ||| | || || Sbjct 1481592 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481651 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||| || ||||||||||| | ||| || || || | ||| | ||||||||| || Sbjct 1481652 CAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTG 1481711 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||||| | | |||| ||||| ||||||||| |||| ||||| ||||| Sbjct 1481712 GATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1481771 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||| || ||||| ||||||||| Sbjct 1481772 GCCAGTAAGGGTTTTAACGAAAATTTGCATG 1481802 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || ||||||||||||||||| || | ||| ||| | || || Sbjct 1415683 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415742 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || ||||| |||||||| |||||||| | || | ||||||||| || Sbjct 1415743 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1415802 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||||| | | || | ||| | |||||||| |||| ||||| ||||| Sbjct 1415803 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415862 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||||||||| Sbjct 1415863 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || ||||||||||||||||| || | ||| ||| | || || Sbjct 1415911 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415970 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || ||||| |||||||| |||||||| | || | ||||||||| || Sbjct 1415971 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1416030 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||||| | | || | ||| | |||||||| |||| ||||| ||||| Sbjct 1416031 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1416090 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||||||||| Sbjct 1416091 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||||||||||||||||| | || ||| | || || Sbjct 1481136 CACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1481195 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || |||||||| | ||| || ||||| | ||| | ||||||||| || Sbjct 1481196 CAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 1481255 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || |||| | | || | ||| | | |||||| |||| ||||| ||||| Sbjct 1481256 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481315 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||| ||||||||||| Sbjct 1481316 GCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| || |||||||| |||||||| || | ||| ||| | || || Sbjct 1481364 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481423 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 | || || || ||||| |||||||| |||||||| | ||| | ||||||||| || Sbjct 1481424 TAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTG 1481483 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || |||| | | || | ||| | | |||||| |||| ||||| ||||| Sbjct 1481484 AATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481543 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||||||||| Sbjct 1481544 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||| | | || | || |||| ||||| ||||| || Sbjct 1415474 TCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAA 1415533 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 |||||||| ||||| || | ||| | ||||||||| || ||||| || || || || Sbjct 1415534 ATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTG 1415593 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || | ||| | |||||||| |||| ||||| ||||| || || | ||||| | Sbjct 1415594 T--CGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGA 1415651 Query 44325 CGAAGATTTGCAT 44337 | ||||||||||| Sbjct 1415652 CAAAGATTTGCAT 1415664 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||||| |||||||| || | | ||| | || || Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTC 1480967 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || ||||||||||| || || || || | ||| | ||||||||| || Sbjct 1480968 CAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTG 1481027 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || |||| | | || | ||| | | |||||| |||| ||||| ||||| Sbjct 1481028 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTT 1481087 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||| ||||||||||| Sbjct 1481088 GCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 >seq34 Length=2241197 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| || |||||||| | | ||| | || |||| |||||||| |||||| Sbjct 1643076 TCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAG 1643017 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||| ||| |||||||| | ||| | ||||||||| || ||||| || || | | Sbjct 1643016 ATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTG 1642957 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || | ||| | ||||||||| |||| ||||| || || || || |||||||| || Sbjct 1642956 TCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACA 1642897 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 1642896 AAGATTTGCAT 1642886 >seq5 Length=1173598 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| ||||||||||||||||| || | ||| || | || ||| Sbjct 909363 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCC 909304 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| || || || |||||||| |||||||| | ||| | ||||||||| || Sbjct 909303 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 909244 Query 44249 ATCTTCTGCTT 44259 ||||| ||||| Sbjct 909243 ATCTTTTGCTT 909233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989987585998