Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq67 154 4e-32 seq34 145 2e-29 seq5 113 1e-19 seq8 107 5e-18 seq56 104 6e-17 >seq67 Length=1953875 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || || || || ||| | || |||||| ||| ||| Sbjct 1481798 CAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCCGAC 1481739 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||| || || || ||||| || || ||||| ||||| || ||||| ||||| ||| Sbjct 1481738 TCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCAACAA 1481679 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| |||||| | |||||||| | ||||| | || || ||| || Sbjct 1481678 CGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAACATC 1481619 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1481618 CAAAAGGAATCTACTCTTCA-CTTG 1481595 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| ||||| || || || || || || || || ||||||||||| ||| Sbjct 1481114 CAAATCTTTGTGAAGACTCTGACTGGCAAGACTATTACTCTGGAAGTGGAAAGCTCTGAC 1481055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || |||||||||||||| ||||| ||||| |||||||| ||||| ||| Sbjct 1481054 TCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGACCAACAA 1480995 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || || || || | |||||||| | ||| | | || || ||| | Sbjct 1480994 CGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTTTGTCGGACTACAACATT 1480935 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 1480934 CAAAAGGAATCGACCCTTCAT 1480914 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || | || || || || || || | || ||||||||||| ||| Sbjct 1481342 CAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCTGAC 1481283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || || |||||||||||||| ||||| ||||| |||||||| || || ||| Sbjct 1481282 TCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAACAA 1481223 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || | |||||||| | |||||| | ||||| ||| || Sbjct 1481222 CGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAACATC 1481163 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 1481162 CAAAAGGAATCTACTCTTCAT 1481142 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || || ||| | || |||||| ||| ||| Sbjct 1416345 CAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCCGAC 1416286 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || ||||||||||| || || || || ||||| || ||||| ||||| ||| Sbjct 1416285 TCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGACCAACAA 1416226 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || ||||| | |||||||| | |||||| | || || ||| | Sbjct 1416225 CGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTACAACATT 1416166 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1416165 CAAAAGGAATCTACTCTTCA-CTTG 1416142 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || || || || || |||||| || ||| Sbjct 1415661 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1415602 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || |||||||||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1415601 TCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1415542 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || || | |||||||| | ||| | | ||||| ||| || Sbjct 1415541 CGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAACATC 1415482 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 1415481 CAAAAGGAATCGACTCTCCAT 1415461 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || || || || || | || ||||||||||| ||| Sbjct 1481570 CAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCTGAC 1481511 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || |||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct 1481510 TCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 1481451 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| | ||||| | || || ||| | Sbjct 1481450 CGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAACATT 1481391 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1481390 CAAAAGGAATCTACTCTTCA-CTTG 1481367 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || || || || || |||||| || ||| Sbjct 1415889 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1415830 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || ||||||||||| || || ||||| || || || || |||||| Sbjct 1415829 TCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAGCAA 1415770 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | |||||||| | ||||| | || || ||| || Sbjct 1415769 CGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAACATC 1415710 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1415709 CAAAAGGAATCTACTCTTCA-CTTG 1415686 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || || || || || |||||| || ||| Sbjct 1416117 CAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCTGAC 1416058 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || || || ||||||||||| || || ||||| || || || || |||||| Sbjct 1416057 TCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAGCAA 1415998 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | |||||||| | ||||| | || || ||| || Sbjct 1415997 CGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAACATC 1415938 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || || || |||| Sbjct 1415937 CAAAAGGAATCTACTCTTCA-CTTG 1415914 >seq34 Length=2241197 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || ||||| ||||| || || | || |||||| ||| ||| Sbjct 1642889 CAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCTGAC 1642948 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||||||||||||||| ||||| ||||| |||||||| || |||||| Sbjct 1642949 TCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAGCAA 1643008 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || | |||||||| | || | | ||||| || | Sbjct 1643009 CGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAATATT 1643068 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||||||| | || |||| Sbjct 1643069 CAAAAGGAATCAACATTACA-CTTG 1643092 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || || || || || || || || ||| || || Sbjct 1642661 CAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCTTCTGAT 1642720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||| ||||| ||||| ||||| |||||||| || || || || ||| Sbjct 1642721 TCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAACAA 1642780 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || ||||| ||||| || | ||||||||||| ||| | | || || ||| | Sbjct 1642781 CGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTACAACATT 1642840 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| ||||| ||| Sbjct 1642841 CAAAAGGAATCTACACTTCAT 1642861 >seq5 Length=1173598 Score = 113 bits (124), Expect = 1e-19 Identities = 118/154 (77%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| | ||||| || ||||| ||||||||||| ||||| ||||| || ||||| Sbjct 909209 AGCTCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATTCCTCCT 909268 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| | || ||||| || || || | |||||||| | ||||| | || Sbjct 909269 GATCAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGAC 909328 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || || || |||| Sbjct 909329 TACAACATCCAAAAGGAATCCACTCTTCA-CTTG 909361 >seq8 Length=1007018 Score = 107 bits (118), Expect = 5e-18 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| | ||||| |||||||| ||||| || || || || ||||| || ||||| Sbjct 757661 AGCTCTGACTCTATCGACAACGTCAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCT 757602 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||||| | || ||||| || || || | |||||||| | ||||| | || Sbjct 757601 GACCAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGAC 757542 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || || || |||| Sbjct 757541 TACAACATCCAAAAGGAATCCACCCTTCA-CTTG 757509 >seq56 Length=2073579 Score = 104 bits (114), Expect = 6e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| | || || || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 1295478 AGCTCTGACTCTATTGACAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCT 1295537 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||||| | || ||||| || || || | |||||||| | ||||| | || Sbjct 1295538 GACCAGCAACGCTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGAC 1295597 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || || || |||| Sbjct 1295598 TACAACATCCAAAAGGAATCCACTCTTCA-CTTG 1295630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729750256236