Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq748 100 2e-16 seq304 95.1 1e-14 seq172 95.1 1e-14 seq179 89.7 4e-13 >seq748 Length=202608 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || || || || ||||| ||||| ||| ||| | | Sbjct 91199 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91258 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| |||||||||||| | || ||| ||| Sbjct 91259 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91318 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || |||||||| |||||| ||| | | |||||||| Sbjct 91319 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91378 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| ||||||||||||||| | || ||||| Sbjct 91379 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTACG 91413 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | || || || || || ||||| ||||| ||| ||| | | Sbjct 91655 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91714 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| |||||||||||| | || ||| ||| Sbjct 91715 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91774 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || |||||||| |||||| ||| | | |||||||| Sbjct 91775 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91834 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| ||||||||||||||| | || ||||| Sbjct 91835 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 91869 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| |||||| | ||||| ||||| || |||||||| ||| Sbjct 91520 GATAAAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAA 91579 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| |||||||| ||||||||||||||| | || ||| Sbjct 91580 GATGGACGTACTCTTTCTGATTACAACATTCAAAAAGAATCTACTCTTCACTTAGTTTTA 91639 Query 25248 CG 25249 || Sbjct 91640 CG 91641 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 ||||| |||||||| || | || || || || || ||||| || || ||| ||| Sbjct 90965 GTAAAGATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATCACTTTAGAAGTTGAA 91024 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 | | || || | | || |||| || ||| ||||| |||||| | || | Sbjct 91025 TCTTCTGATACTATTGAAAATGTCAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCA 91084 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || |||||| | ||||| ||||| || |||||||| |||||| ||| | | ||| Sbjct 91085 GACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGAT 91144 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| |||||||| ||||||||||||||| | || ||||| Sbjct 91145 TACAACATTCAAAAAGAATCTACTCTTCACTTAGTCTTACG 91185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || ||| |||||| | ||||| ||||| || |||||||| ||| Sbjct 91976 GATAAGGAAGGTATTCCACCAGACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAA 92035 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| |||||||| ||||||||||||||| | || ||| Sbjct 92036 GATGGACGTACTCTTTCTGATTACAACATTCAAAAAGAATCTACTCTTCACTTAGTCTTA 92095 Query 25248 CG 25249 || Sbjct 92096 CG 92097 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || ||| |||||| | ||||| ||||| || |||||||| ||| Sbjct 92204 GATAAGGAAGGTATTCCACCAGACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAA 92263 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| |||||||| ||||||||||| ||| | || ||| Sbjct 92264 GATGGACGTACTCTTTCTGATTACAACATTCAAAAAGAATCTACTCTCCACTTAGTCTTA 92323 Query 25248 CG 25249 || Sbjct 92324 CG 92325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 25132 AAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT 25191 |||||||| | || ||| |||||| | ||||| ||||| || |||||||| |||||| Sbjct 92435 AAGAAGGTATTCCACCAGACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATG 92494 Query 25192 CCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||| | | |||||||| |||||||| ||||||||||| ||| | || ||||| Sbjct 92495 GACGTACTCTTTCTGATTACAACATTCAAAAAGAATCTACTCTCCACTTAGTTTTACG 92552 >seq304 Length=284809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 25013 ATTTATAAGTAA-TAGT-GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACC 25070 |||||||| ||| |||| || | |||||||| || ||||||| | ||||| || ||| Sbjct 189751 ATTTATAATTAAATAGTAGTTGAGATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACC 189692 Query 25071 ATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGAT 25130 |||||| || ||| || | || || | | || |||| || || ||| Sbjct 189691 ATTACCCTTGAGGTTGAATCCTCCGACACTATTGAAAATGTCAAAGCTAAGATCCAAGAT 189632 Query 25131 AAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 25190 || |||||| | || ||| |||||| | |||||||| || || || ||||| |||||| Sbjct 189631 AAGGAAGGTATCCCACCAGACCAACAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGAT 189572 Query 25191 TCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGA 25250 ||| | | || ||||| |||||||||||||||||| | || | || | || Sbjct 189571 GGTCGTACTCTTTCTGACTACAACATTCAAAAGGAATCTACTTTACATCTTGTCCTTCGT 189512 Query 25251 TTACGAGGAGG 25261 ||||| || || Sbjct 189511 TTACGTGGTGG 189501 >seq172 Length=114120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || || || || ||| ||| ||| | | Sbjct 113839 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113898 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| ||||| |||||| | || ||||||| Sbjct 113899 GACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCAGATCAA 113958 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || || ||||| |||||| ||| | | ||||| ||| Sbjct 113959 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 114018 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||| || ||| | || ||||| Sbjct 114019 ATTCAAAAAGAATCTACACTCCACTTAGTCTTACG 114053 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || || || || ||| ||| ||| | | Sbjct 112927 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 112986 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| || || |||||| | || ||| ||| Sbjct 112987 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113046 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || || ||||| |||||| ||| | | ||||| ||| Sbjct 113047 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113106 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||| || || |||| ||||| Sbjct 113107 ATTCAAAAAGAATCTACACTCCATTTGGTCTTACG 113141 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| || || || || ||| ||| ||| | | Sbjct 113383 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113442 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| || || |||||| | || ||| ||| Sbjct 113443 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113502 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || || ||||| |||||| ||| | | ||||| ||| Sbjct 113503 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113562 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||| || || |||| ||||| Sbjct 113563 ATTCAAAAAGAATCTACACTCCATTTGGTCTTACG 113597 >seq179 Length=111796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || |||||||||| | | |||||||| || |||||||| ||| Sbjct 96481 GATAAGGAAGGTATTCCACCAGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAA 96422 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| | | |||||||| |||||||| |||||||||||||| | || | Sbjct 96421 GATGGTCGTACTCTTTCTGATTACAACATTCAAAAAGAATCTACTCTTCATCTTGTTCTT 96362 Query 25248 CGATTACGAGGAGG 25261 || ||||| || || Sbjct 96361 CGTTTACGTGGTGG 96348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410791618183490