Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq748 89.7 4e-13 seq172 89.7 4e-13 seq179 87.8 2e-12 >seq748 Length=202608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| ||||| |||||||||||||||||||| | ||| || ||| Sbjct 92322 AAGACTAAGTGGAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 92263 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||| ||||| | || ||||| || || || || || || || ||||| ||| Sbjct 92262 TCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCT 92203 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || |||||| | ||| | || || | || || || | || | ||| Sbjct 92202 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTAATAGTT 92143 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | ||| || |||||||| ||||| Sbjct 92142 TTACCAGTTAAAGTCTTAACAAAAATTTGCAT 92111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| ||||| |||||||||||||||||||| | ||| || ||| Sbjct 92549 AAAACTAAGTGGAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCT 92490 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||||| ||||| | || ||||| || || || || || || ||| ||| ||| Sbjct 92489 TCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAAT-ACCTTCTTATCT 92431 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || |||||| | ||| | || || | || || || | || | ||| Sbjct 92430 TGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTAATAGTT 92371 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | ||| || |||||||| ||||| Sbjct 92370 TTACCAGTTAAAGTCTTAACAAAAATTTGCAT 92339 >seq172 Length=114120 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 112910 AAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 112851 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || || || ||||| || || ||||||||| Sbjct 112850 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATTCCTTCCTTGTCT 112791 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || ||| || | ||| | ||||| | || || || | ||| | || Sbjct 112790 TGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 112731 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATTACT 118754 || || || | ||| ||||| || || ||||| || || ||||||| Sbjct 112730 TTACCAGTTAAAGTCTTTACGAAGATTTGCAT---TTTTTTTATTACT 112686 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 114050 AAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 113991 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || ||||| ||||| || || ||||| ||| Sbjct 113990 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTATCT 113931 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||| || | ||| | ||||| | || || || | ||| | || Sbjct 113930 TGAATTTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 113871 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| || ||||| || || ||||| Sbjct 113870 TTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| |||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 113138 AAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 113079 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || || || ||||| || || ||||||||| Sbjct 113078 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 113019 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || ||| || | ||| | ||||| | || || || | ||| | || Sbjct 113018 TGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 112959 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| || ||||| || || ||||| Sbjct 112958 TTACCAGTCAAGGTCTTTACGAAGATTTGCAT 112927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 113366 AAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 113307 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || || || || || || || ||||| ||| Sbjct 113306 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCT 113247 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || |||||| | ||| | ||||| | || || || | ||| | || Sbjct 113246 TGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 113187 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| ||||| || || ||||| Sbjct 113186 TTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113155 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || ||||| |||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 113594 AAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 113535 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || || || ||||| || || ||||||||| Sbjct 113534 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCT 113475 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || ||| || | ||| | ||||| | || || || | ||| | || Sbjct 113474 TGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 113415 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| || ||||| || || ||||| Sbjct 113414 TTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || ||||||| |||||| ||||||||||| || ||||| | ||| || ||| Sbjct 113822 AAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCT 113763 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | || || ||||| | || ||||| || || || || || || || ||||| ||| Sbjct 113762 TCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCT 113703 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || |||||| | ||| | ||||| | || || || | ||| | || Sbjct 113702 TGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTC 113643 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||| ||||| || || ||||| Sbjct 113642 TTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113611 >seq179 Length=111796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||| || ||||| | || | |||| || | ||||| |||||||||||||||||||| Sbjct 96347 ACCACCACGTAAACG-AAGAACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAATCAG 96405 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| || || |||| | ||| || ||||| || | Sbjct 96406 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTG 96465 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||| || ||| || | ||| | ||||| | || | Sbjct 96466 GAATACCTTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCAA 96525 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCT 118734 | || | ||| | || || || || |||||||| |||||||||| Sbjct 96526 CTTCTAAGGTAATGGTCTTACCAGTGAGAGTTTTAACAAAAATCT 96570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433824927636220