Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq172 98.7 1e-15 seq304 95.1 1e-14 seq562 91.5 2e-13 seq269 91.5 2e-13 >seq172 Length=114120 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 112889 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 112830 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || ||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 112829 ATAAGACGTTGTTGGTCTGGAGGAATTCCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 112771 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | ||||| || || || |||| |||||||| Sbjct 112770 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTTAAAGTCTTTAC 112711 Query 43172 AAAGATTTGCATTTTT 43187 ||||||||||||||| Sbjct 112710 GAAGATTTGCATTTTT 112695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | ||| || ||||||||||| ||||||| ||||| || | Sbjct 113142 ACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCC 113083 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| ||||||||||| || || || || || ||||| | || | | ||||| Sbjct 113082 ATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 113023 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | ||||| | | | ||||| ||||| || || | |||| Sbjct 113022 GT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGA 112964 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || | |||||||| ||||||||||| Sbjct 112963 TAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 112927 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| || |||||||| | ||| || ||||||||||| ||||||| ||||| || | Sbjct 113598 ACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCC 113539 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| ||||||||||| || || || || || ||||| | || | | ||||| Sbjct 113538 ATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 113479 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| | || | ||||| | | | ||||| ||||| || || | |||| Sbjct 113478 GT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGA 113420 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || | |||||||| ||||||||||| Sbjct 113419 TAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113383 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 113345 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113286 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111 || || || || ||||| | || | | ||||| | | ||| | || | || | || | Sbjct 113285 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATCTTAGCTTTAACGTT 113227 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113226 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTAC 113167 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 113166 GAAGATTTGCAT 113155 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 113801 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113742 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111 || || || || ||||| | || | | ||||| | | ||| | || | || | || | Sbjct 113741 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATCTTAGCTTTAACGTT 113683 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113682 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTAC 113623 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 113622 GAAGATTTGCAT 113611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 114029 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113970 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || || || | || | | ||||| | | ||| |||| | ||||| | Sbjct 113969 ATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 113911 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113910 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAGGTCTTTAC 113851 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 113850 GAAGATTTGCAT 113839 >seq304 Length=284809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | || | ||| || || ||||||||||| ||||| |||| Sbjct 189501 CCACCACGTAAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 189560 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||||| ||||| || || || || ||||| | || Sbjct 189561 AGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGG 189620 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| || ||| || ||||| | | | |||||| ||||| || Sbjct 189621 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACC 189680 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| || ||||| || || || |||||||||||||| Sbjct 189681 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 189727 >seq562 Length=28403 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 19291 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 19232 Query 60126 TACTACCGAGGATTGAATAT 60145 ||||||| ||| | |||| Sbjct 19231 TACTACCTGGGAATCTATAT 19212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27608 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27667 Query 60126 TACTACCGAGGAT 60138 ||||||| |||| Sbjct 27668 TACTACCTGGGAT 27680 >seq269 Length=85960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 76949 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 77008 Query 60126 TACTACCGAGGAT 60138 ||||||| |||| Sbjct 77009 TACTACCTGGGAT 77021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810202109800