Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq172 127 3e-24 seq748 123 4e-23 seq179 93.3 6e-14 seq481 89.7 8e-13 >seq172 Length=114120 Score = 127 bits (140), Expect = 3e-24 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | ||||||||||| ||||||||||| ||| Sbjct 112925 CCACCACGAAGACGTAAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 112866 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| || || |||||| Sbjct 112865 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGA 112806 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| ||| || ||| ||||||| Sbjct 112805 ATTCCTTCCTTGTCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACT 112746 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| ||||| || ||||| ||||| || || | ||| ||||||||||| || Sbjct 112745 TCTAAGGTGATAGTCTTACCAGTTAAAGTCTTTACGAAGATTTGCATTTTTTT 112693 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| |||||||| | ||||||||||| ||||||||||| ||| Sbjct 113153 CCACCACGAAGACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 113094 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| || || |||||| Sbjct 113093 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGA 113034 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||||||| Sbjct 113033 ATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACT 112974 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 112973 TCTAAGGTGATAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 112927 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| |||||||| | ||||||||||| ||||||||||| ||| Sbjct 113609 CCACCACGAAGACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 113550 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| || || |||||| Sbjct 113549 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGA 113490 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| ||| || ||| ||||||| Sbjct 113489 ATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACT 113430 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 113429 TCTAAGGTGATAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113383 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | ||||||||||| ||||||||||| ||| Sbjct 114065 CCACCACGAAGACGTAAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 114006 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| ||||| |||||| Sbjct 114005 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCTGGAGGA 113946 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||| || ||| ||||||| Sbjct 113945 ATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACT 113886 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 113885 TCTAAGGTGATAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113839 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | ||||||||||| ||||||||||| ||| Sbjct 113381 CCACCACGAAGACGTAAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 113322 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| || || || ||| Sbjct 113321 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 113262 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||| || ||| ||||||| Sbjct 113261 ATACCTTCCTTATCTTGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACT 113202 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 113201 TCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113155 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | ||||||||||| ||||||||||| ||| Sbjct 113837 CCACCACGAAGACGTAAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAA 113778 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| |||||||| || ||||||||||| | | ||| || || || ||| Sbjct 113777 AGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 113718 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||| || ||| ||||||| Sbjct 113717 ATACCTTCCTTATCTTGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACT 113658 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| || || || || | ||| |||||||| Sbjct 113657 TCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113611 >seq748 Length=202608 Score = 123 bits (136), Expect = 4e-23 Identities = 179/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 91197 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 91138 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 91137 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 91078 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| |||||| ||| ||| ||| Sbjct 91077 ATACCTTCCTTATCTTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCAACT 91018 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT-TTTATTAGAAAA 146289 |||| ||||| |||||||| ||||| || |||| || |||||||| |||| | | Sbjct 91017 TCTAAAGTGATAGTTTTACCAGTTAAAGTCTTAACAAAAATTTGCATCTTTACT----AT 90962 Query 146290 ATATTTGTTaaaaaaaaTA 146308 ||||| ||| ||||||| Sbjct 90961 TTATTTATTACTAAAAATA 90943 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 91425 CCACCACGAAGACGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 91366 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 91365 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 91306 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| ||| ||||||| Sbjct 91305 ATACCTTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATGGTATCAGAAGATTCTACT 91246 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || |||||||| ||||| || |||| || |||||||| Sbjct 91245 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 91199 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 91653 CCACCACGAAGACGTAAAACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 91594 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 91593 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 91534 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| ||| ||| ||| Sbjct 91533 ATACCTTCTTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCAACT 91474 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| ||||| || |||| || |||||||| Sbjct 91473 TCTAAAGTGATAGTCTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 91427 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 91881 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 91822 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 91821 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 91762 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| ||| ||||||| Sbjct 91761 ATACCTTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATGGTATCAGAAGATTCTACT 91702 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || |||||||| ||||| || |||| || |||||||| Sbjct 91701 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 91655 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 92109 CCACCACGAAGACGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 92050 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 92049 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 91990 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| |||||| ||| ||||||| Sbjct 91989 ATACCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCTACT 91930 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || ||||| ||||| || |||| || |||||||| Sbjct 91929 TCTAAAGTGATAGTCTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 91883 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || || || | |||||||||||| || || ||||| ||| Sbjct 92337 CCACCACGAAGACGTAAGACTAAGTGGAGAGTAGATTCTTTTTGAATGTTGTAATCAGAA 92278 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || ||| Sbjct 92277 AGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGA 92218 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| |||||| ||| ||| ||| Sbjct 92217 ATACCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCAACT 92158 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || || |||||||| ||||| || |||| || |||||||| Sbjct 92157 TCTAAAGTAATAGTTTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 92111 Score = 116 bits (128), Expect = 6e-21 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | ||| || || || | |||||||||||| || || ||||| | Sbjct 92566 TTCCACCACGAAGACGTAAAACTAAGTGGAGAGTAGATTCTTTTTGAATGTTGTAATCAG 92507 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | ||| ||||||||||| ||||||||||| | | ||| || || || | Sbjct 92506 AAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTG 92447 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| |||||||| |||||| ||| ||| | Sbjct 92446 GAATACCTTC-TTATCTTGAATCTTAGCTTTAACATTTTCAATAGTATCAGAAGATTCAA 92388 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| || || |||||||| ||||| || |||| || |||||||| Sbjct 92387 CTTCTAAAGTAATAGTTTTACCAGTTAAAGTCTTAACAAAAATTTGCAT 92339 >seq179 Length=111796 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| | |||||||||||| || || ||||| |||||||| | | ||| |||||||| Sbjct 96371 ATGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTG 96430 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| || || | ||| ||||| || ||||| ||||| |||||||| Sbjct 96431 TTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG 96484 >seq481 Length=438726 Score = 89.7 bits (98), Expect = 8e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 15791 TTCATTACAAATATTATTATTTattaatttaaaattataactagatgaaaataacataaa 15850 ||||||| ||||||||||||| ||||| |||| |||| ||| || |||||| | || Sbjct 338675 TTCATTATAAATATTATTATTATTTAATGTAAAGTTATTACTTTAT--AAATAATAATAA 338732 Query 15851 tagacataataaaatgtaataattcatgtttaataatcaataTTATTA 15898 || |||||||||| | |||||| ||||||| | || | |||||||| Sbjct 338733 TATTTATAATAAAATATCATAATTAATGTTTATTTATTATTATTATTA 338780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743516780627200