Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq172 188 2e-42 seq748 176 1e-38 seq179 174 4e-38 seq168 91.5 3e-13 >seq172 Length=114120 Score = 188 bits (208), Expect = 2e-42 Identities = 189/243 (78%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| || | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 112911 TAAG-ACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 112853 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | ||||| || ||||| |||||||| || | Sbjct 112852 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATTCCTTCCTTGT 112793 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| ||||| |||||||| | || || || |||||| |||| || |||| Sbjct 112792 CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 112733 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA-CAGTATTTATTAGAGTA 104584 |||||||||| | || ||||| || || |||||||| | || | |||||||| || | Sbjct 112732 TCTTACCAGTTAAAGTCTTTACGAAGATTTGCATTTTTTTTATTACTATTTATTTGATAA 112673 Query 104585 ATA 104587 ||| Sbjct 112672 ATA 112670 Score = 176 bits (194), Expect = 1e-38 Identities = 168/214 (79%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| || | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 114051 TAAG-ACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 113993 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | |||||||| ||||| || ||||| |||| Sbjct 113992 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTAT 113933 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | ||||| || ||||| |||||||| | || || || |||||| |||| || |||| Sbjct 113932 CTTGAATTTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 113873 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || ||||| || || ||||| Sbjct 113872 TCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113839 Score = 170 bits (188), Expect = 4e-37 Identities = 167/214 (78%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| || | ||| | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 113139 TAAG-ACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 113081 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | ||||| || ||||| || ||||| || | Sbjct 113080 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGT 113021 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| ||||| |||||||| | || || || |||||| |||| || |||| Sbjct 113020 CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 112961 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || ||||| || || ||||| Sbjct 112960 TCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 112927 Score = 170 bits (188), Expect = 4e-37 Identities = 167/214 (78%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| || | ||| | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 113595 TAAG-ACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 113537 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | ||||| || ||||| || ||||| || | Sbjct 113536 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGT 113477 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| ||||| |||||||| | || || || |||||| |||| || |||| Sbjct 113476 CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 113417 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || ||||| || || ||||| Sbjct 113416 TCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113383 Score = 167 bits (184), Expect = 5e-36 Identities = 166/214 (78%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| || | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 113367 TAAG-ACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 113309 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | ||||| || || || || ||||| |||| Sbjct 113308 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT 113249 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| ||||| || ||||| | || || || |||||| |||| || |||| Sbjct 113248 CTTGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 113189 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || ||||| || || ||||| Sbjct 113188 TCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113155 Score = 167 bits (184), Expect = 5e-36 Identities = 166/214 (78%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 104346 TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGT 104405 |||| |||| || | |||||||||||| ||||||||||| ||||| ||||| | || | Sbjct 113823 TAAG-ACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCAT 113765 Query 104406 CTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTAT 104465 |||||| ||| || ||||||||||| || | ||||| || || || || ||||| |||| Sbjct 113764 CTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT 113705 Query 104466 CCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 | |||||||| ||||| || ||||| | || || || |||||| |||| || |||| Sbjct 113704 CTTGAATCTTAGCTTTAACGTTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAG 113645 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||| | || ||||| || || ||||| Sbjct 113644 TCTTACCAGTCAAAGTCTTTACGAAGATTTGCAT 113611 >seq748 Length=202608 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 91395 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 91336 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||||||||| |||||||| ||||| Sbjct 91335 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 91276 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || |||||| |||| |||||||| |||||||| | || Sbjct 91275 ACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 91216 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 91215 TTAACAAAAATTTGCAT 91199 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 91851 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 91792 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||||||||| |||||||| ||||| Sbjct 91791 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTAGCTTTG 91732 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || |||||| |||| |||||||| |||||||| | || Sbjct 91731 ACATTTTCAATGGTATCAGAAGATTCTACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 91672 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 91671 TTAACAAAAATTTGCAT 91655 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 91623 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 91564 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||||||||| |||||||| ||||| Sbjct 91563 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTAGCTTTA 91504 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| || ||| || |||| || |||||||||||||| | || Sbjct 91503 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATAGTCTTACCAGTTAAAGTC 91444 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 91443 TTAACAAAAATTTGCAT 91427 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 92079 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 92020 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||| ||||| |||||||| ||||| Sbjct 92019 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCTTTA 91960 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| || |||||| |||| || |||||||||||||| | || Sbjct 91959 ACATTTTCAATAGTATCAGAAGATTCTACTTCTAAAGTGATAGTCTTACCAGTTAAAGTC 91900 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 91899 TTAACAAAAATTTGCAT 91883 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 92307 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 92248 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||| ||||| |||||||| ||||| Sbjct 92247 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCTTTA 92188 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| || ||| || |||| |||||||| |||||||| | || Sbjct 92187 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 92128 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 92127 TTAACAAAAATTTGCAT 92111 Score = 159 bits (176), Expect = 8e-34 Identities = 166/216 (77%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 91167 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 91108 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||| ||||| |||||||| ||||| Sbjct 91107 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCTTTG 91048 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| || ||| || |||| || ||||| |||||||| | || Sbjct 91047 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATAGTTTTACCAGTTAAAGTC 90988 Query 104543 TTTACAAATATCTGCATTTTGTGTACAGTATTTATT 104578 || ||||| || ||||| || ||| |||||||| Sbjct 90987 TTAACAAAAATTTGCATCTT---TAC--TATTTATT 90957 Score = 158 bits (174), Expect = 3e-33 Identities = 154/197 (78%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || || ||||| ||||| | || ||||||| |||||| ||| Sbjct 92534 GTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTACCA 92475 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||||| || || || || ||||| ||||| |||||||| ||||| Sbjct 92474 GCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTC-TTATCTTGAATCTTAGCTTTA 92416 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| || ||| || |||| |||||||| |||||||| | || Sbjct 92415 ACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTAATAGTTTTACCAGTTAAAGTC 92356 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 92355 TTAACAAAAATTTGCAT 92339 >seq179 Length=111796 Score = 174 bits (192), Expect = 4e-38 Identities = 188/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||||||||| ||||| || || ||||| ||||| | ||| || Sbjct 96362 AAGAACAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATC 96421 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| |||||| || ||||| |||| | |||||||| || || || ||||| ||||| Sbjct 96422 TTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATC 96481 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| |||||||| | || || || ||| || |||| ||||| || Sbjct 96482 TTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGT 96541 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGTATTTATTAGAGTAAT 104586 ||||||||| || ||||| ||||| |||| ||| | | |||| | || | |||| Sbjct 96542 CTTACCAGTGAGAGTTTTAACAAAAATCTTTTATTTTTTTTTTTTATTAAATAAATTAAT 96601 Query 104587 AATTATTTA 104595 |||||| || Sbjct 96602 AATTATATA 96610 >seq168 Length=116959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 65724 ATTTTTTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCTTA 65783 ||| |||| || || | ||| || | |||||| || || ||| ||| |||| | | Sbjct 1325 ATTCTTTCTAAAATTAATTGTGCAATTCTATCACCCTTCTTAATAACAAATTCCTTTTCA 1266 Query 65784 CCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAGCA 65843 || ||||| || || | | |||| ||||||||| ||||| ||||| | |||||||||| Sbjct 1265 CCAAAATTGAACATAACAACACCAAGATTACCTCTGTAGTCGGAATCAACAACACCAGCA 1206 Query 65844 CCTACATCTATAAAGTAATTATACGCTAATCCA 65876 ||||| || ||||||| ||| ||||| ||| Sbjct 1205 CCTACGTCGATAAAGTGTTTAATAGCTAAACCA 1173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151383131377780