Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq179 105 6e-18 seq748 86.0 6e-12 seq304 86.0 6e-12 seq172 82.4 7e-11 >seq179 Length=111796 Score = 105 bits (116), Expect = 6e-18 Identities = 149/206 (72%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || | ||||||||| ||||| | ||| ||||| | || || || ||| || Sbjct 96367 CAAGATGAAGAGTAGATTCTTTTTGAATGTTGTAATCAG--AAAGAGTACGACCATCTTC 96424 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||| ||| |||||||||| | ||| |||||||| ||||||||||| || || | Sbjct 96425 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTG 96484 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || ||||| | | |||||||| || || || | || ||||| || Sbjct 96485 AATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCAACTTCTAAGGTAATGGTCTT 96544 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCT 95003 ||||| |||||||| ||||| |||| Sbjct 96545 ACCAGTGAGAGTTTTAACAAAAATCT 96570 >seq748 Length=202608 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | ||||||||| ||||| | ||| ||||| | ||| | Sbjct 91185 CGTAAGACTAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCA 91126 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||||| || |||| || | | ||| || ||||| ||||||||||| || Sbjct 91125 TCTTCTAATTGTTTACCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTA 91066 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || || ||||| | | ||| |||| || || || | ||||| Sbjct 91065 TCTTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAAGATTCAACTTCTAAAGTGATA 91006 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTT 95022 ||||| ||||| | ||| || ||||| || ||||| |||| | ||||| Sbjct 91005 GTTTTACCAGTTAAAGTCTTAACAAAAATTTGCATCTTTACTATTTATTT 90956 >seq304 Length=284809 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| || ||||||||||||||||| | ||| || | | | || || || ||| || Sbjct 189520 CAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAGT--CAGAAAGAGTACGACCATCTTC 189577 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | || || ||| | ||||| | | ||| || ||||| || |||||||| || || | Sbjct 189578 TAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGGGATACCTTCCTTATCTTG 189637 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || || ||||| | | |||||| | | || || |||| || ||||| || Sbjct 189638 GATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAACCTCAAGGGTAATGGTCTT 189697 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| |||||||| ||||| Sbjct 189698 ACCCGTAAGGGTTTTGACAAAGATTTGCAT 189727 >seq172 Length=114120 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || || || ||||| | |||||||| ||||| | |||||||| | ||| | Sbjct 114053 CGTAAGACTAAGTGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCA 113994 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | || || || |||| || | | ||| |||||||||||||||||||| || Sbjct 113993 TCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTA 113934 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || ||||| | | |||||||| || || || | ||||| Sbjct 113933 TCTTGAATTTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATA 113874 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | || || || ||||| ||||| Sbjct 113873 GTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285400232600