Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq304 100 3e-16 seq172 96.9 4e-15 seq562 82.4 8e-11 seq269 82.4 8e-11 >seq304 Length=284809 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | |||||| | || | ||| || || ||||||||||| ||||| |||| Sbjct 189500 ACCACCACGTAAACGAAGGACAAGATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCAGA 189559 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| |||||||| ||||| || || || || ||||| | ||| Sbjct 189560 AAGAGTACGACCATCTTCTAATTGCTTACCGGCGAAGATAAGACGTTGTTGGTCTGGTGG 189619 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||| || ||| || ||||| | | | |||||| ||||| || Sbjct 189620 GATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCGGAGGATTCAAC 189679 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||| || ||||| || || || |||||||||||||| Sbjct 189680 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTGACAAAGATTTGCAT 189727 >seq172 Length=114120 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 112889 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 112830 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || || || ||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 112829 ATAAGACGTTGTTGGTCTGGAGGAATTCCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 112771 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || |||| |||||||| Sbjct 112770 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTTAAAGTCTTTAC 112711 Query 42197 AAAGATTTGCATTTT 42211 |||||||||||||| Sbjct 112710 GAAGATTTGCATTTT 112696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || |||||||| | ||| || ||||||||||| ||||||| ||||| || | Sbjct 113142 ACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCC 113083 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| ||||||||||| || || || || || ||||| | || | | ||||| Sbjct 113082 ATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 113023 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | ||||| | | | ||||| ||||| || || | |||| Sbjct 113022 GT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGA 112964 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || | |||||||| ||||||||||| Sbjct 112963 TAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 112927 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| || |||||||| | ||| || ||||||||||| ||||||| ||||| || | Sbjct 113598 ACGTAAGACCAAATGGAGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCC 113539 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| ||||||||||| || || || || || ||||| | || | | ||||| Sbjct 113538 ATCTTCTAATTGCTTACCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 113479 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | || | ||||| | | | ||||| ||||| || || | |||| Sbjct 113478 GT-CTTGAATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGA 113420 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || | |||||||| ||||||||||| Sbjct 113419 TAGTCTTACCAGTCAAGGTCTTTACGAAGATTTGCAT 113383 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 113345 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113286 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 42136 || || || || ||||| | ||| | | ||||| | | ||| | || | || | || | Sbjct 113285 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATCTTAGCTTTAACGTT 113227 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113226 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTAC 113167 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 113166 GAAGATTTGCAT 113155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 113801 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113742 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 42136 || || || || ||||| | ||| | | ||||| | | ||| | || | || | || | Sbjct 113741 ATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTAT-CTTGAATCTTAGCTTTAACGTT 113683 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113682 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAAGTCTTTAC 113623 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 113622 GAAGATTTGCAT 113611 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||||| ||||| || | || |||| ||||||||||| || Sbjct 114029 TCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTACCAGCAAAA 113970 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || || || || || | || | | ||||| | | ||| |||| | ||||| | Sbjct 113969 ATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 113911 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || || | |||||||| Sbjct 113910 TTCAATAGTGTCAGAAGATTCTACTTCTAAGGTGATAGTCTTACCAGTCAAGGTCTTTAC 113851 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 113850 GAAGATTTGCAT 113839 >seq562 Length=28403 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 19291 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 19232 Query 57067 TACTACCGAGGATTGAATAT 57086 ||||||| ||| | |||| Sbjct 19231 TACTACCTGGGAATCTATAT 19212 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 27608 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27667 Query 57067 TACTACCGAGGAT 57079 ||||||| |||| Sbjct 27668 TACTACCTGGGAT 27680 >seq269 Length=85960 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 76949 CTCCCAGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 77008 Query 57067 TACTACCGAGGAT 57079 ||||||| |||| Sbjct 77009 TACTACCTGGGAT 77021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205772184400