Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq748 141 1e-28 seq172 141 1e-28 seq304 86.0 9e-12 >seq748 Length=202608 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||| ||||||||||| |||||||| ||| |||| Sbjct 91199 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91258 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||| || |||||||||||||| || || ||||| ||| Sbjct 91259 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91318 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 91319 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91378 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 91379 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTA 91411 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||| ||||||||||| |||||||| ||| |||| Sbjct 91655 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91714 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||| || |||||||||||||| || || ||||| ||| Sbjct 91715 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91774 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 91775 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91834 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 91835 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTA 91867 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||| || ||||| || |||||||| ||| |||| Sbjct 91427 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAGACTATCACTTTAGAAGTTGAATCTTCT 91486 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||| || |||||||||||||| || || ||||| ||| Sbjct 91487 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91546 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 91547 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91606 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || ||||| ||||| ||| Sbjct 91607 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTA 91639 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||| ||||||||||| |||||||| ||| |||| Sbjct 92111 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 92170 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||| || |||||||| ||||| || || ||||| ||| Sbjct 92171 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 92230 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 92231 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 92290 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || || ||||| ||| Sbjct 92291 ATTCAAAAAGAATCTACTCTCCACTTAGTCTTA 92323 Score = 132 bits (146), Expect = 7e-26 Identities = 158/213 (74%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || || ||||| ||||||||||| |||||||| ||| |||| Sbjct 92339 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 92398 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||| || |||||| ||||||| || || ||||| ||| Sbjct 92399 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGAT-AAGAAGGTATTCCACCAGACCAA 92457 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| ||||| || | |||||| | ||| | || ||||| || Sbjct 92458 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 92517 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || || ||||| ||| Sbjct 92518 ATTCAAAAAGAATCTACTCTCCACTTAGTTTTA 92550 >seq172 Length=114120 Score = 141 bits (156), Expect = 1e-28 Identities = 184/251 (73%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 155788 tatttat-tgtttat--aataaaaatttatgtaataaaatgcaaatatttattaaaaCAT 155844 ||||||| | ||||| |||||| | | || || ||||||||||| || | || || | Sbjct 112662 TATTTATATATTTATCAAATAAATAGTAATAAAA-AAAATGCAAATCTTCGTAAAGACTT 112720 Query 155845 TGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAA 155904 | ||||| || ||||| || |||||||| ||| |||||| | |||| ||| || ||| Sbjct 112721 TAACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCTGACACTATTGAAAATGTCAAAG 112780 Query 155905 ATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTA 155964 ||| || ||||| || ||||| || |||||||| |||||| | | |||| ||| |||| Sbjct 112781 CTAAGATTCAAGACAAGGAAGGAATTCCTCCAGACCAACAACGTCTTATTTTTGCTGGTA 112840 Query 155965 AGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTC 156024 |||| | |||||| | ||| | || ||||||||||| ||||| | || || | Sbjct 112841 AGCAATTAGAAGATGGACGTACTCTTTCTGATTATAATATTCAAAAAGAATCTACACTCC 112900 Query 156025 ATTTAGTGTTA 156035 | ||||| ||| Sbjct 112901 ACTTAGTCTTA 112911 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || |||||||| ||| |||| Sbjct 113839 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113898 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| |||||| |||||||| ||||| || |||||||| ||| Sbjct 113899 GACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCAGATCAA 113958 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 113959 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 114018 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || || ||||| ||| Sbjct 114019 ATTCAAAAAGAATCTACACTCCACTTAGTCTTA 114051 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || |||||||| ||| |||| Sbjct 113155 ATGCAAATCTTCGTAAAGACTTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113214 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| ||| ||| || |||||||| ||||| || || ||||| ||| Sbjct 113215 GACACTATTGAAAACGTTAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 113274 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 113275 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113334 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || || ||||| ||| Sbjct 113335 ATTCAAAAAGAATCTACACTCCACTTAGTCTTA 113367 Score = 136 bits (150), Expect = 6e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || |||||||| ||| |||| Sbjct 113611 ATGCAAATCTTCGTAAAGACTTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113670 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||| ||| ||| || |||||||| ||||| || || ||||| ||| Sbjct 113671 GACACTATTGAAAACGTTAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 113730 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 113731 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113790 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || || ||||| ||| Sbjct 113791 ATTCAAAAAGAATCTACACTCCACTTAGTCTTA 113823 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || |||||||| ||| |||| Sbjct 112927 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 112986 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| ||| || ||||| || ||||| || |||||||| ||| Sbjct 112987 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113046 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 113047 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113106 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || ||||| || ||| Sbjct 113107 ATTCAAAAAGAATCTACACTCCATTTGGTCTTA 113139 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || |||||||| || ||||| || |||||||| ||| |||| Sbjct 113383 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113442 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| ||| || ||||| || ||||| || |||||||| ||| Sbjct 113443 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113502 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| |||||||| | |||||| | ||| | || ||||||||| Sbjct 113503 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113562 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || ||||| | || || ||||| || ||| Sbjct 113563 ATTCAAAAAGAATCTACACTCCATTTGGTCTTA 113595 >seq304 Length=284809 Score = 86.0 bits (94), Expect = 9e-12 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 155784 aaagtatttattgtttataataaaaatttatgtaataaaatgcaaatatttattaaaaCA 155843 || ||||||| | ||||||| ||| || || | | |||||||| ||| | ||||| Sbjct 189761 AATGTATTTAAT--TTATAATTAAATAGTA-GT--TGAGATGCAAATCTTTGTCAAAACC 189707 Query 155844 TTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAA 155903 | || || || || ||||| | || || ||| || || | |||| ||| || ||| Sbjct 189706 CTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCCGACACTATTGAAAATGTCAAA 189647 Query 155904 AATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGT 155963 ||| || |||||||| ||||| || || ||||| |||||| | | || | |||||| Sbjct 189646 GCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAACAACGTCTTATCTTCGCCGGT 189587 Query 155964 AAGCAGCTCGAAGAT 155978 ||||| | |||||| Sbjct 189586 AAGCAATTAGAAGAT 189572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731862531406000