Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq615 125 9e-24 seq284 109 7e-19 seq191 105 8e-18 seq259 98.7 1e-15 >seq615 Length=217977 Score = 125 bits (138), Expect = 9e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 168526 AAGAACTTTTATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 168585 ||||| | || ||| || ||| |||| |||||| |||| |||| | | ||| Sbjct 39935 AAGAATTGTTTTGGTTTTTAAGAGGTGATACTGATGGAAAAATATTATCAAAGAAAGGAA 39876 Query 168586 TTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTACCGAAA 168645 || | | ||| | | ||||||||| ||||||||| | ||| | |||||| || || | Sbjct 39875 TTCATATATGGGAAGGTAATGGTTCCCGTGAATTTCTTGATAAAATTGGTTTAACAGATA 39816 Query 168646 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 168705 || | |||||||||||||| ||||| ||||| | |||||| | ||| || ||| ||| Sbjct 39815 GAGAGGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGTGCTAAAT 39756 Query 168706 ATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAA 168749 || | || ||| |||||||||| || || |||||| ||| ||| Sbjct 39755 ATGTAGATTGTCATACAGATTATACAGGTCAAGGAAAAGATCAA 39712 >seq284 Length=82653 Score = 109 bits (120), Expect = 7e-19 Identities = 171/242 (71%), Gaps = 16/242 (7%) Strand=Plus/Plus Query 162924 TTGATGGTCTTAAAGAATCTCAAAGAAAGGTTATTTATGCCA--TAAGaaaaaaaTTTAG 162981 |||||||| | ||| | |||||||||| ||||||||| | ||| ||||||| Sbjct 3654 TTGATGGTTTAAAACCAGGTCAAAGAAAGATTATTTATGGTTGTTTTAAAAGAAATTTAA 3713 Query 162982 ATCAAAAGGGGATTTTATTAAGGTTGCTCAATTAAGTGGGTATGTTGCGGAACAAACAGA 163041 |||| | ||||| ||||||||| | | || |||||||| ||||| ||| Sbjct 3714 --CAAATGAA------ATTAAAGTTGCTCAACTTACAGGTTATGTTGCAGAACACTCAGC 3765 Query 163042 CTATAAACACGGTGAACAAAATTTATGTGAAACTATAATT---AAGTTTGCCCAAGATTT 163098 || | || |||||||||| | | | |||||| |||| || || || |||||||| Sbjct 3766 TTACCATCATGGTGAACAAAGTCT---TCAAACTACAATTGTTAATTTAGCTCAAGATTT 3822 Query 163099 TGTTGGTACAAATAATATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGA 163158 |||||||| |||||||| | ||| | | || |||||||||||||||| | ||| | Sbjct 3823 TGTTGGTAGTAATAATATTCCTTTATTAGTTCCAAATGGTCAATTTGGTACACGTTTACA 3882 Query 163159 AG 163160 || Sbjct 3883 AG 3884 >seq191 Length=109312 Score = 105 bits (116), Expect = 8e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||||||| || | ||| |||||||||| ||||||||||| |||||||||||||||| Sbjct 20473 TGAATTTGTCTGTTACTTCTCCATATAATGCAGATTTTGATGGTGATGAAATGAATTTAC 20414 Query 52027 ATGTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAA 52067 |||| || |||||||||| | ||| |||||| | |||||| Sbjct 20413 ATGTACCACAATCATATGAAACTAGAGCTGAAATTCAAGAA 20373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 193769 TACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAA 193828 ||||||||||| | || || | |||| || | || ||||||||||| || ||| | || Sbjct 91193 TACTGGTAAAAAACTTCAAGCTCAAATCTTCCTTGGTCCAACTTATTACCAACGTTTAAA 91252 Query 193829 ACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTGACTACT--TTACAT 193886 |||||||| | ||||| || || | | || ||| | ||| || | | |||| | Sbjct 91253 GCATATGGTAGATGATAAGATTCACAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-T 91310 Query 193887 CGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAA 193946 || |||||| ||| | |||| | ||| ||| | | || || |||||||| || Sbjct 91311 CGTCAACCAGTAGAAGGTAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAG 91370 Query 193947 GACTGTAT-TTTAGTTCATGGTGCTACTCAATTCTTGAATGAA 193988 || ||||| |||| |||||||||| | |||||||| || ||| Sbjct 91371 GATTGTATGATTAG-TCATGGTGCTGCACAATTCTTAAAAGAA 91412 >seq259 Length=461915 Score = 98.7 bits (108), Expect = 1e-15 Identities = 202/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 193762 GTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATC 193821 |||| |||||||| || | | ||| | || ||| | || ||| || ||||| | Sbjct 207357 GTGGTATTACTGGTGAACCATTAGAAGCATATATCTTTTTTGGTCCAGTTTTCTATCAAC 207298 Query 193822 GTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAA-GTGACTACT 193880 || | ||||| ||||| |||||||||||||||||| || ||| || ||| || | Sbjct 207297 GTTTAAAACACATGGTATTAGATAAAATGCATGCTAGATCTCGTGGTAAACGTG-CTGTT 207239 Query 193881 TTACATCGACAACCAAATTGTGGTCGTTCTCAAGG--TGGAGGTTTAAGATTTGGAGAAA 193938 ||| | ||||||||| |||||||| |||| ||| ||| | | | || |||| Sbjct 207238 TTAACTAGACAACCAACAGAAGGTCGTTC--AAGGGATGGTGGTCTTCGTGTAGGTGAAA 207181 Query 193939 TGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAG---AATGT 193995 |||| || ||| | | | ||||||||||| | | || || | ||||| |||| Sbjct 207180 TGGAACGTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGATTAATG- 207122 Query 193996 TTTTGTATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 194048 ||| ||| |||| ||||| || | |||||||| ||| |||||| ||||| Sbjct 207121 TTTAGTA--GTGATGCTTTTGAAATTGATGTTTGTCAAGATTGTGGTTTGATT 207071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/133 (77%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 || ||| |||| |||||||| | |||| || |||| | ||||||| ||||||| | || Sbjct 207758 CCAGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 207700 Query 193505 --TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATT 193562 ||| ||| |||||||||||||||||| | | ||||| || ||||||||||| || Sbjct 207699 CGTTAATCA--AGAAGATATGCCATTTACTGATCTTGGTATAGTTCCAGATATTATCATG 207642 Query 193563 AATCCAAATTGTA 193575 ||||| || ||| Sbjct 207641 AATCCTCATGGTA 207629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635169382389800