Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq284 120 4e-22 seq615 113 6e-20 seq191 102 1e-16 seq259 100 4e-16 >seq284 Length=82653 Score = 120 bits (132), Expect = 4e-22 Identities = 127/166 (77%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 165160 ATTAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAA 165219 ||||||||||||||| | | || |||||||||||||| ||| ||| | ||||||||| Sbjct 3722 ATTAAAGTTGCTCAACTTACAGGTTATGTTGCAGAACACTCAGCTTACCATCATGGTGAA 3781 Query 165220 CAAAATTTATGTGAAACTATAA---TTAAGTTTGCCCAAGATTTTGTTGGTACAAATAAT 165276 |||| | | | |||||| || |||| || || |||||||||||||||| |||||| Sbjct 3782 CAAAGTCT---TCAAACTACAATTGTTAATTTAGCTCAAGATTTTGTTGGTAGTAATAAT 3838 Query 165277 ATAGCATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAG 165322 || | ||| | | || |||||||||||||||| | ||| ||| Sbjct 3839 ATTCCTTTATTAGTTCCAAATGGTCAATTTGGTACACGTTTACAAG 3884 >seq615 Length=217977 Score = 113 bits (124), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 ||||| | || ||| || | | |||| |||||| |||| |||| | | ||| Sbjct 39935 AAGAATTGTTTTGGTTTTTAAGAGGTGATACTGATGGAAAAATATTATCAAAGAAAGGAA 39876 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 || | | ||| | | ||||||||| ||||||||| | ||| | || || || || | Sbjct 39875 TTCATATATGGGAAGGTAATGGTTCCCGTGAATTTCTTGATAAAATTGGTTTAACAGATA 39816 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 || | |||||||||||||| ||||| ||||| | |||||| | ||| || ||| ||| Sbjct 39815 GAGAGGAAGGTGATTTAGGACCAATATATGGTTGGCAATGGCGTCATTTTGGTGCTAAAT 39756 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGA 171825 || | || ||| |||||||||| ||||| |||||| Sbjct 39755 ATGTAGATTGTCATACAGATTATACAGGTCAAGGA 39721 >seq191 Length=109312 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 50417 TGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 50476 ||||||| || | ||| |||||||||| ||||||||||| |||||||||||||||| Sbjct 20473 TGAATTTGTCTGTTACTTCTCCATATAATGCAGATTTTGATGGTGATGAAATGAATTTAC 20414 Query 50477 ATGTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAA 50517 |||| || |||||||||| | ||| |||||| | |||||| Sbjct 20413 ATGTACCACAATCATATGAAACTAGAGCTGAAATTCAAGAA 20373 Score = 102 bits (112), Expect = 1e-16 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 193322 TACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 193381 ||||||||||||| || || | |||| || | || |||||||||||||| ||| | || Sbjct 91193 TACTGGTAAAAAACTTCAAGCTCAAATCTTCCTTGGTCCAACTTATTACCAACGTTTAAA 91252 Query 193382 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT--TTACAT 193439 || ||||| | ||||| || || | | || ||| | ||| || | | |||| | Sbjct 91253 GCATATGGTAGATGATAAGATTCACAGTCGTGCTCGTGGTCCAGT-ACAAATTCTTAC-T 91310 Query 193440 CGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAA 193499 || |||||| ||| | |||| | ||| ||| | | || || ||||||||||| Sbjct 91311 CGTCAACCAGTAGAAGGTAGATCTCGTGATGGTGGTCTTCGTTTCGGTGAAATGGAAAAG 91370 Query 193500 GACTGTAT-TTTAGTCCATGGTGCTACTCAATTCTTAAATGAA 193541 || ||||| ||||| ||||||||| | ||||||||||| ||| Sbjct 91371 GATTGTATGATTAGT-CATGGTGCTGCACAATTCTTAAAAGAA 91412 >seq259 Length=461915 Score = 100 bits (110), Expect = 4e-16 Identities = 199/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 193321 TTACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTA 193380 |||||||| || | | ||| | || ||| | || ||| || || || ||| | | Sbjct 207351 TTACTGGTGAACCATTAGAAGCATATATCTTTTTTGGTCCAGTTTTCTATCAACGTTTAA 207292 Query 193381 AACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAA-GTGACTACTTTACAT 193439 |||||||||| |||||||||||||||||| || ||| || ||| || |||| | Sbjct 207291 AACACATGGTATTAGATAAAATGCATGCTAGATCTCGTGGTAAACGTG-CTGTTTTAACT 207233 Query 193440 CGACAACCAAATTGTGGTCGTTCTCAAGG--TGGAGGTTTAAGATTTGGAGAAATGGAAA 193497 ||||||||| |||||| |||||| ||| ||| | | | || ||||||||| Sbjct 207232 AGACAACCAACAGAAGGTCGT--TCAAGGGATGGTGGTCTTCGTGTAGGTGAAATGGAAC 207175 Query 193498 AAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG---AATGTTTTTGT 193554 || ||| | | | |||||||||| | | || |||| ||||| |||| ||| || Sbjct 207174 GTGATTGTTTAATTGGTCATGGTGCTAGTAATTTATTAATGGAAAGATTAATG-TTTAGT 207116 Query 193555 ATTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGATT 193601 | |||| ||||| || | |||||||| ||| |||||| ||||| Sbjct 207115 A--GTGATGCTTTTGAAATTGATGTTTGTCAAGATTGTGGTTTGATT 207071 Score = 82.4 bits (90), Expect = 1e-10 Identities = 103/135 (76%), Gaps = 10/135 (7%) Strand=Plus/Minus Query 192999 CCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTATGAT 193057 || ||| |||| |||||||| | ||| || |||| | ||||||| ||||||| | || Sbjct 207758 CCAGAATTAGGTGATAAATTCTCTTCAAGACATGGTC-AAAAAGGTGTTTGTGGTTTAAT 207700 Query 193058 --TTATTCACAAGAAGATATGCCATTTAC--AACTTCAGGTATGGTACCAGATATTATTA 193113 ||| ||| |||||||||||||||||| | ||| ||||| || ||||||||||| | Sbjct 207699 CGTTAATCA--AGAAGATATGCCATTTACTGATCTT--GGTATAGTTCCAGATATTATCA 207644 Query 193114 TTAATCCAAATTGTA 193128 | ||||| || ||| Sbjct 207643 TGAATCCTCATGGTA 207629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628523068377600