Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq179 95.1 2e-14 seq172 91.5 3e-13 seq748 86.0 1e-11 >seq179 Length=111796 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || || || |||||||| ||||| | || |||||||| Sbjct 96375 AGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCTAATTGTTTA 96434 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||||| | ||||||| |||| | || ||||||||||||||||||| ||| Sbjct 96435 CCGGCAAAGATTAAACGTTGTTGATCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCT 96494 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 96495 TTGACATTTTCAATAGT 96511 >seq172 Length=114120 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||||||||| ||||| | | |||||||| Sbjct 112898 AGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTA 112839 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| ||||| | ||| ||||||| ||||||||||| ||| Sbjct 112838 CCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATCTTAGCT 112779 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 112778 TTGACATTTTCAATAGT 112762 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/137 (74%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||||||||| ||||| | | |||||||| Sbjct 114038 AGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTA 113979 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | ||||||| ||||| | || |||||||||||||||| || ||| Sbjct 113978 CCAGCAAAAATAAGACGTTGTTGATCTGGAGGAATACCTTCCTTATCTTGAATTTTAGCT 113919 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 113918 TTGACATTTTCAATAGT 113902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||||||||| ||||| | | |||||||| Sbjct 113126 AGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTA 113067 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| ||||| | || ||||||| ||||||||||| ||| Sbjct 113066 CCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGCT 113007 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 113006 TTGACATTTTCAATAGT 112990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||||||||| ||||| | | |||||||| Sbjct 113582 AGTGTAGATTCTTTTTGAATATTATAATCAGAAAGAGTACGTCCATCTTCTAATTGCTTA 113523 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| ||||| | || ||||||| ||||||||||| ||| Sbjct 113522 CCAGCAAAAATAAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTAGCT 113463 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 113462 TTGACATTTTCAATAGT 113446 >seq748 Length=202608 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || || || |||||||| ||||| | | |||||||| Sbjct 91170 AGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTA 91111 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| |||| | || ||||||||||||||||||| ||| Sbjct 91110 CCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCT 91051 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 91050 TTGACATTTTCAATAGTAT 91032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || || || |||||||| ||||| | | |||||||| Sbjct 92082 AGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTA 92023 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| |||| | || ||||||||||||||||||| ||| Sbjct 92022 CCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCT 91963 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 91962 TTAACATTTTCAATAGTAT 91944 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || || || |||||||| ||||| | | |||||||| Sbjct 92310 AGAGTAGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGTCCATCTTCTAATTGTTTA 92251 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || || | |||||| |||| | || ||||||||||||||||||| ||| Sbjct 92250 CCAGCAAAAATAAGACGTTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATCTTAGCT 92191 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 92190 TTAACATTTTCAATAGTAT 92172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903399512117600