Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq284 143 6e-29 seq191 122 2e-22 seq44 105 2e-17 >seq284 Length=82653 Score = 143 bits (158), Expect = 6e-29 Identities = 262/384 (68%), Gaps = 15/384 (4%) Strand=Plus/Plus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 ||||| |||||| | |||||||| || ||||| | ||| |||| |||| | Sbjct 2465 GGTATACCAAAATTGGATGATGCTAATAATGCTGGTACAAAGCATTCTAAAGATTGTGTT 2524 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| || | || || || ||||||||| |||| || ||| ||||||| ||||| || Sbjct 2525 TTAATTTTAACAGAAGGGGATTCTGCTAAAGCATTAGCTATTAGTGGTTTAACTGTTGTT 2584 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAA 279244 ||||||||||| ||||| || || || ||| | |||||| | | |||| ||||||| Sbjct 2585 GGTCGTGATAATTATGGTGTTTTCCCATTACGTGGTAAAATGTTGAATGTTCGTGAT-GC 2643 Query 279245 ATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAA 279304 ||||| |||| ||| | | | |||||| ||| | | | | | || Sbjct 2644 TTCACA-------------TAAATCAA-TTATGGATAATGCAGAAGTAAGTGCTATTAAG 2689 Query 279305 CAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATGGT 279364 ||||| | || ||| | || |||||| || || ||||| |||||| ||||||| Sbjct 2690 CAAATTCTTGGTTTACAACATGGTAAAGTTTATGAAAATACAGATAGTTTAAGATATGGA 2749 Query 279365 AAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATTAATACTT 279424 | ||||| ||| || | || |||||| ||||| |||||||||||| ||| | || Sbjct 2750 CATATTATGATTATGGCTGATCAAGATACGGATGGTTCTCACATTAAAGGTTTAGTTATT 2809 Query 279425 AATTGGGTTGATACTTTCTGGCCA 279448 |||| | ||| ||| |||||| Sbjct 2810 AATTTCTTGGATCATTTTTGGCCA 2833 Score = 141 bits (156), Expect = 2e-28 Identities = 208/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 ||||||||| |||||||| | || || || |||| ||||||| |||||| ||||| Sbjct 3587 GAATTTATTAATAAAGAATTAATTCAATTCTCTATGGCTGATGTTATTCGTTCAATTCCA 3646 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||||| | | |||||||| ||||| || | |||||||| | ||||||| ||||| Sbjct 3647 TCATT-AGTTGATGGTTTAAAACCAGGTCAAAGAAAGATTATTTATGGTTGTTTTAAAAG 3705 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 ||| || ||| |||||| |||||||| | ||||||||||| ||||||| ||| Sbjct 3706 AAATTTAACAAATGAAATTAAAGTTGCTCAACTTACAGGTTATGTTGCAGAACACTCAGC 3765 Query 279985 TTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT 280044 ||| ||||| |||||| ||||||| | | ||||| | | || ||||||||| | Sbjct 3766 TTACCATCATGGTGAACAAAGTCTTCAAACTACAATTGTTAATTTAGCTCAAGATTTTGT 3825 Query 280045 GGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 | | || || | | | | |||||||||||||||||| | ||| Sbjct 3826 TGGTAGTAATAATATTCCTTTATTAGTTCCAAATGGTCAATTTGGTACACGT 3877 >seq191 Length=109312 Score = 122 bits (134), Expect = 2e-22 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||| | ||||| ||||| ||| | |||||| | ||||||||| | ||||||||| | Sbjct 20579 CATATTAATGATGGTGATTTAGTTATCTTCAATCGTCAACCATCATTACATAAAATGAGT 20520 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG-ACATTTCGATTAAATGTAAGTGC 305427 ||||||| ||||||| | |||||| | | | ||| || || || || ||| | || Sbjct 20519 ATGATGGGTCATAAAATTAAAGTAATGCC-GTATTCTACTTTCCGTTTGAATTTGTCTGT 20461 Query 305428 TTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | | | || |||||||| ||||||||||| |||||||||||| | |||||||| ||||| Sbjct 20460 TACTTCTCCATATAATGCAGATTTTGATGGTGATGAAATGAATTTACATGTACCACAATC 20401 Query 305488 A 305488 | Sbjct 20400 A 20400 Score = 116 bits (128), Expect = 9e-21 Identities = 181/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTC 304946 |||||| |||| |||||||||| ||||||||||| | || || || || || | Sbjct 20992 TACAATTTCATGTTGCAACATTCATGGATAATGATACAGCGGGTATGCCACAAGCTATGC 20933 Query 304947 AAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTA 305006 ||| | ||| ||||| ||||| | |||||| || | ||||| ||||| ||| | | Sbjct 20932 AAAAAAGTGGAAGACCATTAAAAGCTATTAGAGCTCGTTTAAAAGGAAAAGAAGGTAGAA 20873 Query 305007 TTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTG 305066 |||| |||||||| ||||| |||||||||||||| ||| | | || || || || Sbjct 20872 TTCGTGGTAATCTTATGGGTAAACGTGTTGATTTCTCAGCACGTACAGTTATTACTGGTG 20813 Query 305067 ATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAAC 305124 || | | ||| || || || | || ||||||| ||| |||||| ||| |||| Sbjct 20812 ATCCAAATATTTCAATTGATCAAGTTGGTGTTCCAA--GAAGTATTGCTAGAAATTTAAC 20755 Query 305125 ATTTCCAGAGAAAGTTA 305141 || ||||| | ||||| Sbjct 20754 TTTCCCAGAAACAGTTA 20738 >seq44 Length=174132 Score = 105 bits (116), Expect = 2e-17 Identities = 149/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | |||| |||||||| ||||| | | || |||||||||||||| |||| ||| Sbjct 71569 TCATCATAGCACCTGCATTATCAAATTC-TCCACAATAATTTGGTGCTGAGAATAACGTA 71627 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG---T 167354 ||||||| ||| || ||| ||||||||||||||||| || |||| ||| ||||| Sbjct 71628 ACTAATTGACGCTTTGCAAAGAATTCATAACCATCTTCTACTACTTGATGTGCACGACAA 71687 Query 167355 ATTACAAGTTCAACTCCTAtttttttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTA 167414 ||| || | || || | ||||| |||||| || || | || | ||||||| | Sbjct 71688 ATT--AAATCTAAATCATGTTTTTGTAAGAATCTT-GTAACTACATCTGGTCCAAATGTG 71744 Query 167415 TAACTACAACCTCTTTCAGATTCA 167438 |||| |||||| ||| |||| Sbjct 71745 AAACTTACACCTCTATCATTTTCA 71768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186797061749635