Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq179 159 3e-34 seq304 152 4e-32 seq748 136 3e-27 seq172 122 8e-23 seq233 113 4e-20 >seq179 Length=111796 Score = 159 bits (176), Expect = 3e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 26992 AGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACT 27051 |||| ||||| |||||||| || || ||| | ||||| | ||||| ||| | || ||| Sbjct 96570 AGATTTTTGTTAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAATCTTCTGACA 96511 Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 | ||||| | |||||| || |||||||| || ||||| || ||||| |||||||| | Sbjct 96510 CTATTGAAAATGTCAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGATCAACAAC 96451 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTC 27171 ||||||| | ||||| |||||||| ||||| || || |||| ||||||||||||| Sbjct 96450 GTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAACATTC 96391 Query 27172 AAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| || || || | ||| | ||| | ||||| || ||||| Sbjct 96390 AAAAAGAATCTACTCTTCATCTTGTTCTTCGTTTACGTGGTGG 96348 >seq304 Length=284809 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | ||||| ||||| || ||| | ||| Sbjct 189727 ATGCAAATCTTTGTCAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCCTCC 189668 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||| || ||||| || ||||| || ||| Sbjct 189667 GACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 189608 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || ||||| ||||| || || |||| || |||||| Sbjct 189607 CAACGTCTTATCTTCGCCGGTAAGCAATTAGAAGATGGTCGTACTCTTTCTGACTACAAC 189548 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || |||||| | || | ||||| || ||||| Sbjct 189547 ATTCAAAAGGAATCTACTTTACATCTTGTCCTTCGTTTACGTGGTGG 189501 >seq748 Length=202608 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || |||||||| | ||||| ||| | || Sbjct 91199 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91258 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || |||||||| |||||||| || ||||| || ||| Sbjct 91259 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91318 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 91319 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91378 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || ||||| ||| | || ||||| || Sbjct 91379 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTTCGTGGTGGTAT 91428 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || ||| |||| ||| | ||||| ||| | || Sbjct 91427 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAGACTATCACTTTAGAAGTTGAATCTTCT 91486 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||| |||||||| || ||||| || ||| Sbjct 91487 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91546 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 91547 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91606 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || ||||| ||| | || ||||| || Sbjct 91607 ATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTTCGTGGTGGTAT 91656 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || |||||||| | ||||| ||| | || Sbjct 91655 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91714 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || |||||||| |||||||| || ||||| || ||| Sbjct 91715 GATACCATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAA 91774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 91775 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91834 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 91835 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTAT 91884 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || |||| ||| | ||||| ||| | || Sbjct 90971 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATCACTTTAGAAGTTGAATCTTCT 91030 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || |||||||| || ||||| || ||||| || ||| Sbjct 91031 GATACTATTGAAAATGTCAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 91090 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 91091 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 91150 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 91151 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTAT 91200 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || ||| |||| ||| | ||||| ||| | || Sbjct 91883 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAGACTATCACTTTAGAAGTAGAATCTTCT 91942 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||| || ||||| || ||||| || ||| Sbjct 91943 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 92002 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 92003 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 92062 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 92063 ATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGGTAT 92112 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || |||||||| | ||||| ||| | || Sbjct 92111 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 92170 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||| || ||||| || ||||| || ||| Sbjct 92171 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGACCAA 92230 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 92231 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 92290 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 92291 ATTCAAAAAGAATCTACTCTCCACTTAGTCTTACGTCTTCGTGGTGGTAT 92340 Score = 122 bits (134), Expect = 8e-23 Identities = 164/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| | || || || |||||||| | ||||| ||| | || Sbjct 92339 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTTGAATCTTCT 92398 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||| || ||||| || ||||| || ||| Sbjct 92399 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGATAA-GAAGGTATTCCACCAGACCAA 92457 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || |||||||| ||||| | || |||| ||||||||| Sbjct 92458 CAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACAAC 92517 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | || || ||||| ||| | || ||||| Sbjct 92518 ATTCAAAAAGAATCTACTCTCCACTTAGTTTTACGTCTTCGTGGTGG 92564 >seq172 Length=114120 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || |||| || ||| |||| || | ||||| ||| | || Sbjct 112927 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 112986 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || || || || ||| Sbjct 112987 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113046 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||| ||||| | || |||| ||||| || Sbjct 113047 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113106 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | |||||||| || ||| | || ||||| || Sbjct 113107 ATTCAAAAAGAATCTACACTCCATTTGGTCTTACGTCTTCGTGGTGGTAT 113156 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || |||| || ||| |||| || | ||||| ||| | || Sbjct 113383 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113442 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || || || || ||| Sbjct 113443 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAA 113502 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||| ||||| | || |||| ||||| || Sbjct 113503 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 113562 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | |||||||| || ||| | || ||||| || Sbjct 113563 ATTCAAAAAGAATCTACACTCCATTTGGTCTTACGTCTTCGTGGTGGTAT 113612 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || |||| || ||| |||| || | ||||| ||| | || Sbjct 113839 ATGCAAATCTTCGTAAAGACCTTGACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 113898 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||||||||| || ||||| || || || |||||| Sbjct 113899 GACACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCTCCAGATCAA 113958 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||| ||||| | || |||| ||||| || Sbjct 113959 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 114018 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 114019 ATTCAAAAAGAATCTACACTCCACTTAGTCTTACGTCTTCGTGGTGGTAT 114068 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| ||| | || || ||| |||| || | ||||| ||| | || Sbjct 112699 ATGCAAATCTTCGTAAAGACTTTAACTGGTAAGACTATCACCTTAGAAGTAGAATCTTCT 112758 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||| ||||| || || || || ||| Sbjct 112759 GACACTATTGAAAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 112818 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||| ||||| | || |||| ||||| || Sbjct 112819 CAACGTCTTATTTTTGCTGGTAAGCAATTAGAAGATGGACGTACTCTTTCTGATTATAAT 112878 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || || || || ||| | || ||||| || Sbjct 112879 ATTCAAAAAGAATCTACACTCCACTTAGTCTTACGTCTTCGTGGTGGTAT 112928 >seq233 Length=93418 Score = 113 bits (124), Expect = 4e-20 Identities = 139/189 (74%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 26992 AGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACT 27051 |||| || || ||||| || || || ||| |||| || ||||| || || | |||||| Sbjct 52008 AGATTTTCGTCAAAACCCTTACTGGAAAGACTATAACCCTTGAGGTTGAGTCTTCCGACA 51949 Query 27052 CGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC 27111 |||| | || || | || |||||||| || ||||| || ||||| || ||||| | Sbjct 51948 GTATTGTCAATGTTAAGAACAAGATTCAAGAAAAGGAAGGTATTCCACCAGACCAACAAC 51889 Query 27112 GTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTACAACA 27168 || | || | |||||| |||||||| ||||| ||| ||| |||| || ||||||| Sbjct 51888 GTCTTATCTTCGCCGGTAAACAATTAGAAGATGACAGA---ACCCTTTCTGACTACAACA 51832 Query 27169 TTCAAAAGG 27177 ||||||||| Sbjct 51831 TTCAAAAGG 51823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912773243200