Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anaeromyces_20robustus_20[genbank_20GCA_5F002104895.1_202017-04-20] 1,035 sequences; 71,685,009 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq748 96.9 2e-15 seq179 89.7 4e-13 >seq748 Length=202608 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| ||| |||||| | || || ||| | Sbjct 91199 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91258 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || || ||||||||| |||| || | Sbjct 91259 GATACCATTGAAAAT--GTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACC 91316 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || |||||||| || || | ||| | | || ||||||| Sbjct 91317 AACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACA 91376 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| | || || ||||| ||| | ||||| || Sbjct 91377 ACATTCAAAAAGAATCTACTCTTCACTTAGTTTTACGTCTTCGTGGTGG 91425 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 27781 AATAGTAAA-ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGT 27839 ||||||||| |||||||||||||| || ||| | ||||| ||| ||| || | || || Sbjct 90961 AATAGTAAAGATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATCACTTTAGAAGT 91020 Query 27840 CGAAAGCACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTT 27897 ||| | || | || | ||| |||||| || || || || |||||| || Sbjct 91021 TGAATCTTCTGATACTATTGAAAAT--GTCAAAGCTAAGATTCAAGATAAGGAAGGTATT 91078 Query 27898 CCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTG 27957 || || || ||||| | |||||||| || |||||||| || || | ||| | | Sbjct 91079 CCACCAGACCAACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTT 91138 Query 27958 TCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||||||||| |||||||| ||| | || || || || ||| | ||||| || Sbjct 91139 TCTGATTACAACATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 91197 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | ||||| ||| |||||| | || || ||| | Sbjct 91655 ATGCAAATTTTTGTTAAGACTTTAACTGGTAAAACTATTACTTTAGAAGTAGAATCTTCT 91714 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || || ||||||||| |||| || | Sbjct 91715 GATACCATTGAAAAT--GTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCACCAGACC 91772 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | |||||||| || |||||||| || || | ||| | | || ||||||| Sbjct 91773 AACAACGTCTTATTTTTGCTGGTAAACAATTAGAAGATGGACGTACTCTTTCTGATTACA 91832 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| | || || || || ||| | ||||| || Sbjct 91833 ACATTCAAAAAGAATCTACTCTTCACTTAGTCTTACGTCTTCGTGGTGG 91881 >seq179 Length=111796 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 27787 AAAATGCAA-ATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||| || |||||||| |||||||| ||||| || ||||| | || || ||| Sbjct 96578 AAAATAAAAGATTTTTGTTAAAACTCTCACTGGTAAGACCATTACCTTAGAAGTTGAATC 96519 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | ||| | | || |||||| || || || || |||||| |||| || Sbjct 96518 TTCTGACACTATTGAAAATGTCAAAGCTAAGATTCAAGATAAGGAAGGTATTCCACCAGA 96459 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||||| ||||| |||||||| |||||||| || || | || | | || ||||| Sbjct 96458 TCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTA 96399 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| |||||||| ||| | ||| | ||| | ||||| ||||| || Sbjct 96398 CAACATTCAAAAAGAATCTACTCTTCATCTTGTTCTTCGTTTACGTGGTGG 96348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857911129445