Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq624 105 1e-17 seq1440 95.1 3e-14 seq928 89.7 1e-12 >seq624 Length=13322 Score = 105 bits (116), Expect = 1e-17 Identities = 296/443 (67%), Gaps = 10/443 (2%) Strand=Plus/Minus Query 230202 TGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC-GCCATCTTTTGGCTGCGGAACAAAG 230260 ||| || ||||| || ||| | ||| | ||| |||||||||||||| ||| | Sbjct 7792 TGTCGAGGGTAT-CTTTTTCTCAGGATCCTTTGCAGCCATCTTTTGGCTCAAGAAACGTG 7734 Query 230261 GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATC 230320 || | ||||| ||||| | ||||||||||| || || || |||||||| ||| Sbjct 7733 GTCTTATGCCCGGCCTGACATTCTCTAACGAGTTGATTTCACGTGATGAGGGTCTTCATA 7674 Query 230321 AACAGTTCGGCGAGCTTATGTATTCAAAG--CTCCAGAACAAGCTACCATTCGAGACGGT 230378 | || | | | ||| | |||| | ||| |||| |||| | || | | || Sbjct 7673 CCGACTTTG-CTTGTCTAT-TGTTCACACTCCTCAAGAATAAGCCAGCAGACTCGGTTGT 7616 Query 230379 CAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCC 230438 | |||||| | || || ||||||| | ||| |||||||| | || || | || Sbjct 7615 GCACCAAATCTTGACCGAGGCAGTTGCTATTGAACAGGAGTTCCTGACCGAGGCGCTCCC 7556 Query 230439 ATGTCGC-CTTATTGGCATGAACGCTGAACTTATG-GGACAGTACATCGAATTCGTAGCC 230496 | || || || ||||||||||| || | || ||| || | || || || || || || Sbjct 7555 A-GTTGCACTGATTGGCATGAATGCCAATCTCATGAAGAGA-TATATTGAGTTTGTTGCT 7498 Query 230497 GACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCA 230556 ||||| | ||| | | ||| || | |||| ||| | | |||| || |||| Sbjct 7497 GACCGTCTCTTTTTGGAACTCGGGCTCCCCAAAGCATACGGCGTTGAGAATCCATTTGAT 7438 Query 230557 TTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGAC 230616 || ||||| | || || || ||||| || |||||||| || |||||||| ||| | || Sbjct 7437 TTCATGGAAATTATCTCTCTGCAAGGCAAAACCAACTTTTTTGAAAAGCGAGTCGGCGAG 7378 Query 230617 TATCAGAGGCCTGGTGTGATGAA 230639 ||||||| | |||||| ||||| Sbjct 7377 TATCAGAAGAGTGGTGTAATGAA 7355 >seq1440 Length=6742 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/179 (73%), Gaps = 12/179 (7%) Strand=Plus/Plus Query 319012 TAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 319071 |||||||||||||||||||| || || ||| | || | ||| | || | |||||||| Sbjct 1501 TAACGCCATTGGATATACTGATTAGGGGTCTTTTCTAAATGCTGTTCTAGATGGTGGAAT 1560 Query 319072 GCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC-ACTAC-CGATG- 319128 ||||||||||| ||||| | | ||||| ||| || |||||||| || ||| | | || Sbjct 1561 GCATGCTGTGCAACGTAGCCTACACGCAGATTGGGGTGCTTCCACACGACTCCAAGCTGA 1620 Query 319129 ---GTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTT 319184 |||| || ||| ||||||||||| || | ||| ||| || |||||||| Sbjct 1621 GGAATGGCCTC------TCCAGTGAGCACCTTGATCATGGTCGATTTGCCAGCACCGTT 1673 Score = 95.1 bits (104), Expect = 3e-14 Identities = 190/281 (68%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 319390 TCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTA 319449 || || ||||||| || |||| |||||| ||||||||||| | |||||| || Sbjct 1879 TCTGGGCGCTTCTCAACAAACTTGGACAGGTTTCCCTTGTAATAGGCCAGCTT---CTTC 1935 Query 319450 GGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACA 319509 | || || || || ||| ||||| ||| ||| | || |||||||| || ||| Sbjct 1936 TGCTCATAGTGAATGATATGAGTGCAGACATTGTCCAAAAAGGTCGAGTCGTGCGAAACA 1995 Query 319510 ATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGAC 319569 | | ||| | || ||||| || | | || || || | || |||| |||||| | Sbjct 1996 GTGATGCAGGTCACCTCCTTTTGGCTAACGAGATACTCTACCAGCCACGCCACGTTGGCA 2055 Query 319570 ACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCA 319629 ||| ||||| || || || || |||||||| || | | || || |||||| ||| Sbjct 2056 ACATCCAGATGATTCGTAGGTTCATCAAGAAGAAGAATGTCAGCTTTGGTGAGCATGGCA 2115 Query 319630 CGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGT 319670 || || || | || ||||| ||||| || || || ||||| Sbjct 2116 CGAGCCAGTTCCAGCTTCATCTTCCAACCACCCGAGAGAGT 2156 >seq928 Length=10049 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 320367 GAATTTAGCGGCGTCGGAAGGGTCGTCCACCAGTTTCGCCATGTTCCTGATGATAACACA 320426 ||||| | ||| |||| |||| || ||||| || |||||| ||||||||| | Sbjct 3403 GAATTGATGGGCATCGGCGGGGTTCTCGACCAGCTTACACATGTTATCAATGATAACAGA 3462 Query 320427 TGTCTTACGCCGAACGGGGGTGGTGCGATCGGCAAGCCCGCGGACGAGTAGCGGGGTCAG 320486 ||| | ||| ||| | | |||| || ||||| || || ||||| | || || Sbjct 3463 TGTTTGACGAAGAATAGCAGGCTTGCGCTCAGCAAGACCACGAACGAGCAATGGCACCAT 3522 Query 320487 GATAGACAGGGTCTTCGCGTCAACCGACTGGACGAACGTGGTCGCAGATAGGTTGTGGAC 320546 ||| || || || || |||||| ||| ||||| ||||| |||| || |||| || Sbjct 3523 GATGGAAAGAGTGGGAGCCTCAACCTGCTGCACGAATGTGGTGGCAGCGAGTTTGTAAAC 3582 Query 320547 ACACTCGGGGACGTCCTGAGGAGAACCAATAC 320578 |||||||||||| || | |||| | |||||| Sbjct 3583 ACACTCGGGGACTTCTTCAGGACGAGCAATAC 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057751381043540