Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1370 226 3e-54 seq1193 127 2e-24 seq624 122 1e-22 >seq1370 Length=7093 Score = 226 bits (250), Expect = 3e-54 Identities = 486/719 (68%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||||| ||||| || || | || |||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 54251 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 54310 |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 54311 ATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 54370 || || || || | || ||||| | || ||| |||| ||| |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 54371 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 54430 || ||||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 |||||||| | || || || ||||| || || | ||||| || | |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 54491 TCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549 || || || | || | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 54550 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTT 54609 |||||| | ||| | | ||| ||| || ||||| || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 54610 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTA 54667 || ||||| |||||||| ||||| ||||| || || ||||| | || ||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 54668 TCCTTATATTTGTTAACTACA-TCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 54726 ||| || ||| | | || |||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGTTTCACGA-TGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTGTT 5336 Query 54727 ATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGT 54786 || || ||||||| || || ||||||||| | ||| || || |||| ||||| Sbjct 5335 GTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTTGT 5276 Query 54787 TTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 54845 ||| ||||| | || || | ||| || | ||| || || || ||||| || || |||| Sbjct 5275 TTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGTT 5217 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 53696 ATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 ||||| |||||||| || |||||||||||||| || ||||||| | | || |||| Sbjct 6696 ATGTTGGCAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATT 6637 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 | || || ||||| | ||| || ||||||||||| || | || || || || | Sbjct 6636 CAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATT 6577 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871 | || || |||||||| ||||| ||| |||| |||||||| ||| | || || || Sbjct 6576 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq1193 Length=8092 Score = 127 bits (140), Expect = 2e-24 Identities = 329/496 (66%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 || || || || | ||| |||||||| ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 52918 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 53033 || | | || || |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 53034 TATCTTCTGGAAGGTTTGTATTC--TGAATAGATCCACCATCTACCATAATCCTATTCTT 53091 | | ||| | | || || | || ||||| || | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 53092 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 53151 || |||||||| | | |||||| | | | | || ||||| |||| || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 53152 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 53211 || ||||| ||||| | || | || || || || ||| |||||||| || | || Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 53212 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 53271 |||||| || |||| |||||| | || || || || ||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 53272 ATTTCTAAGACCGTAT 53287 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 53696 ATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 ||||| |||||||| || |||| ||||||||| || ||||||| | | || |||| Sbjct 7124 ATGTTGGCAATGCAAGCGAGGCCAAATTACAAACAGCCACCTCATCCGGAGACGAGTATT 7183 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 | ||||| ||||| | ||| || || ||||||||||| | || || || || | Sbjct 7184 CAACAATCTCTGTGCATAAATTGCTGCATTTGATGGTTCCAAGGTTCTGCTGGTTGGATT 7243 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871 | || || |||||||| ||||| ||| |||| |||||||| ||| | || || || Sbjct 7244 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 7301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 54131 ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC 54190 ||||||| ||||| || || | || |||| | | | || ||||| || || || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 54191 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 54250 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 54251 GCACCATTGGTCCCGGAGATATA 54273 |||||| || || | ||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 >seq624 Length=13322 Score = 122 bits (134), Expect = 1e-22 Identities = 208/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || || || || || ||||||||||||||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || ||||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 ||||| || | | ||| ||||| || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 24567 TGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTA 24623 | ||||| || ||| || || | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 24624 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 24683 || | || ||||| || | ||||| || || || ||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 24684 A 24684 | Sbjct 8375 A 8375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681835495840