Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq624 123 3e-23 seq1447 91.5 2e-13 seq3174 82.4 8e-11 >seq624 Length=13322 Score = 123 bits (136), Expect = 3e-23 Identities = 183/259 (71%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 116644 CATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA 116703 |||||||||||| || || || || |||||||| | |||||| || ||||| || || || Sbjct 8368 CATGTACAAAAAAGCAGAAGCTTCTTTCTGGACTGCCGAGGAAGTAGACCTTTCAAAAGA 8309 Query 116704 CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCT 116760 ||| | |||||||| ||| | | || | || ||| | || || | ||| | Sbjct 8308 CACCATTGACTGGGAAGAGCGTCTTACTGATGATGAACGCTACTTTATTTCTCGTGTGTT 8249 Query 116761 GGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCA 116820 |||||||||||| ||| || ||||| || || |||||||| || ||||| || |||| Sbjct 8248 GGCCTTTTTCGCTGCCTCTGATGGCATTGTTAATGAGAATCTTGTTGAGCGATTTTCTCA 8189 Query 116821 GGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGT 116880 || || || | ||| || || | ||||||||||| |||||| || || ||| | Sbjct 8188 AGATGTTCAAATTTTCGAAGCTCGCTATTTCTACGGCTTCCAGATCATGATTGAAAACAT 8129 Query 116881 GCACTCGGAAATGTATTCG 116899 ||| || ||||| ||| Sbjct 8128 CCACAGTGAGATGTACTCG 8110 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||| | | | || | ||| || | ||| || Sbjct 7866 AAGGCCGACTGGGCACTCAAGTGGATCTCGGATACGGAATCAAGCTTTGGAGTGCGGCTT 7807 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || || || || || |||||||| |||| || || || || || ||||| |||||| Sbjct 7806 GTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGATCCTTTGCAGCCATCTTTTGG 7747 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||||||| || || |||||||||||||| ||| |||||| | || || | || Sbjct 7746 CTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCTCTAACGAGTTGATTTCACGTGAT 7687 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||||| ||| ||||||||| ||| | |||||| Sbjct 7686 GAGGGTCTTCATACCGACTTTGCTTGTCTATTGTTCA 7650 >seq1447 Length=6688 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || |||| || |||||||| ||||| | |||||||| || || || | || Sbjct 2333 TCAAGGCCAAGATTCAGGATAAAGAGGGAATCCCTCCTGACCAGCAGCGTCTGATTTTCG 2274 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| ||||| || |||| || || || ||||||||||||||||||||| | | Sbjct 2273 CTGGCAAGCAGCTTGAAGACGGCCGTACTCTTTCAGACTACAACATCCAGAAGGAGTCTA 2214 Query 40886 CGCTGCATCTAGT 40898 | || || || || Sbjct 2213 CTCTTCACCTTGT 2201 >seq3174 Length=2562 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| || || || || ||||| ||||||||| | || || || | | Sbjct 1674 AATGCAAATATTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAGTCTTC 1733 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||||| || |||| ||||| || || ||||| | ||||| Sbjct 1734 TGATACTATTGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCTGACCA 1793 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 ||| || ||||||| || || || || || || |||| ||||| || Sbjct 1794 GCAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGACGGCCGCACTCT 1841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515184693194080