Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq274 89.7 6e-13 seq812 84.2 3e-11 >seq274 Length=20666 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || ||||||||||| | ||||| || | || || |||||||| |||||||| Sbjct 19177 CTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCGAA 19118 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | | ||| || || ||| || |||| | Sbjct 19117 AATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGGATCTTGGCCTTGACATT 19058 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||| || || ||||| || ||||| || Sbjct 19057 ATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTTACCCGTAAGGGTCTTGAC 18998 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 18997 AAAGATTTGCAT 18986 >seq812 Length=10976 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||| || || ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 67 CTCTTCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTAGCCACTA 8 Query 60126 TACTAC 60131 |||||| Sbjct 7 TACTAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571779302516240