Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1370 242 5e-59 seq624 129 7e-25 seq1193 118 1e-21 >seq1370 Length=7093 Score = 242 bits (268), Expect = 5e-59 Identities = 490/721 (68%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | |||| || ||||| ||| | || | | |||||||||||| || || ||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCT 63548 | |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 63549 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCT 63608 || || || || | || ||||| | || ||| |||| || ||||||||||| Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 63609 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCC 63668 ||| |||||| ||| | || | ||||| ||||||||||| || ||| || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63728 |||||||| | || || || ||||| || || | ||||| || | |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 63729 TCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 ||||| || | || | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 |||||| | ||| || ||||| ||| || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 63848 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTA 63905 || ||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 63906 TCCTTATATTTGTTAACTAT---ATCCATGGTAATACTTGAAATAATCGGAGAATGTTTC 63962 ||| || | || || || |||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGT---TTCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 63963 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 64022 || || ||||| | || || |||||||| | ||| || || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 64023 GTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64082 ||||||||||| | || || ||||| || | || || || || ||||| || || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 64083 T 64083 | Sbjct 5217 T 5217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 62934 ATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATT 62991 ||||| |||||||| || ||||||||||| || || ||||||| | | || |||| Sbjct 6696 ATGTTGGCAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATT 6637 Query 62992 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63051 | || || ||||| | ||| || |||||||| || || | || || || || | Sbjct 6636 CAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATT 6577 Query 63052 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 6576 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq624 Length=13322 Score = 129 bits (142), Expect = 7e-25 Identities = 344/524 (66%), Gaps = 25/524 (5%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| || || | || || || || || || || ||||| ||||| || ||||| |||| Sbjct 7357 CATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTG 7416 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 || || ||| |||||||||||||||| ||||| ||| ||| ||| | || Sbjct 7417 CAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAACGCCGTATGCTTTGGGGAGCCC 7476 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 | ||| ||| | | || || || || || |||||| | ||||| | | ||| Sbjct 7477 GAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGCATT 7536 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| || || ||| |||||| || ||| | || || || || |||||||| | || || Sbjct 7537 CATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAACTGC 7596 Query 33518 ATTTGTTATAATAAATCT-------AACGGTTTCTTCACTCGGTGGATGTAAT----AAA 33566 | || | | || | ||| | ||| | ||| | || | | Sbjct 7597 CTCGGTCA----AGATTTGGTGCACAACCGAGTCT------GCTGGCT-TATTCTTGAGG 7645 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || | |||| | ||| || || ||| || |||||||| || | ||| || ||| Sbjct 7646 AGTGTGAACAATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCG 7705 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 ||||| || || || |||||||| || ||||| || || |||||||| |||| || || Sbjct 7706 TTAGAGAATGTCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAG 7765 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 ||||| || || ||||| || || || |||||||| |||| ||| | | ||||| | | Sbjct 7766 GATCCTGAGAAAAAGATACCCTCGACAGCAGCAAATGCAACAAGCCGCACTCCAAAGCTT 7825 Query 33747 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 | | | || |||||||| | ||||| |||||||| || Sbjct 7826 GATTCCGTATCCGAGATCCACTTGAGTGCCCAGTCGGCCTTTTT 7869 Score = 122 bits (134), Expect = 1e-22 Identities = 208/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 33834 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33893 || || || || || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 33953 ||||| ||||| || ||||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 ||||| || | | ||| ||||| || || |||||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 34014 TGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTA 34070 | ||||| || ||| || || | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 34130 || | || ||||| || | ||||| || || || ||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 34131 A 34131 | Sbjct 8375 A 8375 >seq1193 Length=8092 Score = 118 bits (130), Expect = 1e-21 Identities = 327/496 (66%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 || || || || | ||| |||||||| ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 62156 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 62271 || | | || || |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 62272 TATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTACCATAATCCTATTCTT 62329 | | ||| | | || || | || || || || | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 || |||||||| | | |||||| | | | | || ||||| | || || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 |||||||| ||||| | || | || || || || ||| |||||||| || | | Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 |||||| || |||| |||||| | || || || || ||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 62510 ATTTCTAAGACCGTAT 62525 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | |||| || ||||| ||| | || | | |||||||||||| || || ||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 63489 ATACCATTGGTACCGGAGATATA 63511 | |||||| || || | ||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629775417966240