Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1370 114 1e-20 seq1193 98.7 9e-16 >seq1370 Length=7093 Score = 114 bits (126), Expect = 1e-20 Identities = 284/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||||||||||||||||||||| || ||||| || | | || ||||| | |||| Sbjct 5937 TCGAATATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTG 5878 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 || ||||||| | ||||| | ||||| ||| | | | || ||| || | || ||| Sbjct 5877 CCACCCTGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCA 5818 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 || ||| || ||| | || | ||||| | ||| || | || || || Sbjct 5817 TTGGATAGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTT 5758 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 || || || ||||| ||| ||||| || | || ||| |||| ||| | || Sbjct 5757 AAGCCAATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATG 5698 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 ||||| || ||||||| || | || | ||||||||||||||||| || || Sbjct 5697 CCTTCAATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGG 5638 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || ||||| | || || ||||| || |||| | ||||| |||| ||| Sbjct 5637 GTACCAGCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTG 5578 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || || || || || | || | ||| | |||||||| || | || || | ||| ||| Sbjct 5577 TAAGTCTCAATGGCAGCTTCGACGTCATCACCGTGAATGCCAACAGCGACACGCATCAGC 5518 Query 38533 ATATGTTGTGG 38543 || || || || Sbjct 5517 ATGTGCTGAGG 5507 >seq1193 Length=8092 Score = 98.7 bits (108), Expect = 9e-16 Identities = 281/425 (66%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 36829 CTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTC 36888 |||| ||||||||| || || || || ||| | ||| |||||||| ||||| |||||| Sbjct 6060 CTCAGATAATACATACCTGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTC 6119 Query 36889 AGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAAC 36948 ||||| ||||| | | | | || || ||| ||| || |||||| ||||| Sbjct 6120 AGTTTGGCGTAGTTGATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAAT 6179 Query 36949 GCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTA 37008 ||||| | ||| || || | || | |||| ||||| || || ||||| || ||||| Sbjct 6180 GCACCACGGTCAGCAGCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTG 6239 Query 37009 TATATTTGTTTTATATTATCT--GGTAAATCTAAATG--TTGAATAGAACCATTATGTAA 37064 || | | | ||| || || || ||| |||| ||| |||||||| || | Sbjct 6240 TAGA-TGGCTTTGAGTTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGA 6298 Query 37065 CACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA-CT-TATTAGTTCTCTCAAT 37122 | ||| ||||| ||| | |||| || | | | | || | || || | | Sbjct 6299 AATAATGCGGTTCTTCATGCTGTCATTC--CAGAGTCCGAGCTCGGTCAGATCCTTGAGA 6356 Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || ||| |||| |||| ||| || || ||||| | || | || ||||| || || Sbjct 6357 AGATGTTGATTGACAATCTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGAT 6416 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 ||||| || |||| | |||||| || | | ||||| |||||||| || || ||||| Sbjct 6417 GTATACGGCTCAAAAGCCTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATC 6476 Query 37243 GGTGC 37247 || || Sbjct 6477 GGAGC 6481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468493420551520