Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1370 223 5e-53 seq1193 127 3e-24 seq624 118 1e-21 >seq1370 Length=7093 Score = 223 bits (246), Expect = 5e-53 Identities = 485/719 (67%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 |||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || | || ||||| | || ||| |||| ||| |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461 || ||||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 |||||||| | || || || ||||| || || | ||||| || | |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 66522 TCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||||| || | || | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 |||||| | ||| | | ||| ||| || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 66641 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 66698 || ||||| |||||||| ||||| ||||| || || ||||| |||| ||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 66699 TCCTTATATTTGTTAACTACA-TCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 66757 ||| || ||| | | || |||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGTTTCACGA-TGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTGTT 5336 Query 66758 ATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 66817 || || ||||||| || || |||||||| | ||| || || |||| ||||| Sbjct 5335 GTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTTGT 5276 Query 66818 TTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTT 66876 ||| ||||| | || || | ||| || | ||| || | || ||||| || || |||| Sbjct 5275 TTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGTT 5217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 65727 ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784 ||||| |||||||| || |||||||||||||| || ||||||| | | || |||| Sbjct 6696 ATGTTGGCAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATT 6637 Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844 | || || ||||| | ||| || ||||||||||| || | || || || || | Sbjct 6636 CAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATT 6577 Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 6576 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq1193 Length=8092 Score = 127 bits (140), Expect = 3e-24 Identities = 329/496 (66%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 || || || || | ||| |||||||| ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 64949 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 65064 || | | || || |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 65065 TATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122 | | ||| | | || || | || || || || | | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182 || |||||||| | | |||||| | | | | || ||||| |||| || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 || ||||| ||||| | || | || || || || ||| |||||||| || | || Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 |||||| || |||| |||||| | || || || || ||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 65303 ATTTCTAAGACCGTAT 65318 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 65727 ATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 65784 ||||| |||||||| || |||| ||||||||| || ||||||| | | || |||| Sbjct 7124 ATGTTGGCAATGCAAGCGAGGCCAAATTACAAACAGCCACCTCATCCGGAGACGAGTATT 7183 Query 65785 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 65844 | ||||| ||||| | ||| || || ||||||||||| | || || || || | Sbjct 7184 CAACAATCTCTGTGCATAAATTGCTGCATTTGATGGTTCCAAGGTTCTGCTGGTTGGATT 7243 Query 65845 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 7244 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 7301 >seq624 Length=13322 Score = 118 bits (130), Expect = 1e-21 Identities = 207/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || || || || || ||||||||||||||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || ||||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 ||||| || | | ||| ||||| || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 36590 TGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTTTA 36646 | ||||| || ||| | || | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 || | || ||||| || | ||||| || || || ||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 36707 A 36707 | Sbjct 8375 A 8375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658128718876720