Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1370 232 1e-55 seq624 118 2e-21 seq1193 114 2e-20 >seq1370 Length=7093 Score = 232 bits (256), Expect = 1e-55 Identities = 487/719 (68%), Gaps = 8/719 (1%) Strand=Plus/Minus Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 ||||||| ||||| || || | || ||||| | | | || || || || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 80220 |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 80221 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 80280 || || || || | || ||||| | || ||| |||| ||| |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 80281 ATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 80340 ||| |||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 |||||||| | || || || ||||| || || | ||||| |||| |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 80401 TCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 ||||| || | ||| | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTT 80519 |||||| | ||| | | ||| || || || || ||||| || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 80520 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || ||||| |||||||| ||||| ||||| || || ||||| |||| ||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 80578 TCCTTATATTTGTTAACTACA-TCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 80636 ||| || ||| | | || ||||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGTTTCACGA-TGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTGTT 5336 Query 80637 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 80696 || || ||||| | || || |||||||| | ||| || || |||| ||||| Sbjct 5335 GTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTTGT 5276 Query 80697 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTT 80755 ||||||||| | || || | ||| || | || || | || ||||| || || |||| Sbjct 5275 TTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGTT 5217 >seq624 Length=13322 Score = 118 bits (130), Expect = 2e-21 Identities = 207/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 50212 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 50271 || || || || || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| ||||| || ||||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 ||||| ||| | | ||| ||||| || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 50392 TGTTTTATAAAAT---GTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 | ||||| | ||| || | | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 50508 || | |||||||| || | ||||| || || || ||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 50509 A 50509 | Sbjct 8375 A 8375 >seq1193 Length=8092 Score = 114 bits (126), Expect = 2e-20 Identities = 326/496 (66%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 || || || || | ||| ||||| || ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 78828 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 78943 || | | || || |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 78944 TATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001 | | ||| | | || || | || || || || | | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || |||||||| | | |||||| | | | | || ||||| |||| || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 || ||||| ||||| | || | || || || || ||| ||||| || || | | Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 ||||| || |||| |||||| | || || || |||||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 79182 ATTTCTAAGACCGTAT 79197 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718220693947120