Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1370 233 3e-56 seq624 125 1e-23 seq1193 87.8 2e-12 >seq1370 Length=7093 Score = 233 bits (258), Expect = 3e-56 Identities = 488/721 (68%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 72244 GCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCT 72303 |||||| || || | ||||| ||| | | || ||| ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || || | || ||||| | || ||| |||| ||| |||||||| || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 || ||||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 |||||||| | || || || ||||| || || | ||||| |||| |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 72484 TCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 ||||| || | ||| | || || | || || || || ||||||||||| | ||| || Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 72543 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 72602 |||||| | ||| | | ||| || || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 72603 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || ||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 72661 TCCTTATATTTGTTAACTAT---ATCCATGGTGATACTTGAAATAATCGGAGAATGTTTC 72717 ||| || | || || || ||||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGT---TTCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777 || || ||||| | || || |||||||| | ||| || || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 ||||||||||| | || || | ||| || | || || || || ||||| || || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 72838 T 72838 | Sbjct 5217 T 5217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 ||| |||| || |||||||||||||| || ||||||| | | | |||| | ||| Sbjct 6689 CAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATTCAACAAT 6630 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||| ||||| | ||| || ||||||||||| || | || || || || || || Sbjct 6629 TTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATTTGCGATT 6570 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 || |||||||| ||||| || | || |||||||| ||| | ||||| || Sbjct 6569 GCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq624 Length=13322 Score = 125 bits (138), Expect = 1e-23 Identities = 342/518 (66%), Gaps = 13/518 (3%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| || || | || || || || || || || ||||| ||||| || || || |||| Sbjct 7357 CATTACACCACTCTTCTGATACTCGCCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTG 7416 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 || || ||| |||||||||||||||| ||||| ||| || ||| | || Sbjct 7417 CAGAGAGATAATTTCCATGAAATCAAATGGATTCTCAACGCCGTATGCTTTGGGGAGCCC 7476 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | ||| ||| | | || || | || || |||||| | ||||| | | ||| Sbjct 7477 GAGTTCCAAAAAGAGACGGTCAGCAACAAACTCAATATATCTCTTCATGAGATTGGCATT 7536 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || || ||| |||||| || ||| | || || || || |||||||||| || || Sbjct 7537 CATGCCAATCAGTGCAACTGGGAGCGCCTCGGTCAGGAACTCCTGTTCAATAGCAACTGC 7596 Query 42001 GTCTGTTATAATAGATCTTACTGTTTCTTC-ACTCGG-TGG---ATACAATAAATGTTTA 42055 || || | |||| || || | | || | ||| || | | || | Sbjct 7597 CTCGGTCA----AGAT-TTGGTGCACAACCGAGTCTGCTGGCTTATTCTTGAGGAGTGTG 7651 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| || || ||| || ||||||||||| | ||| || ||||| || Sbjct 7652 AACAATAGACAAGCAAAGTCGGTATGAAGACCCTCATCACGTGAAATCAACTCGTTAGAG 7711 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || |||||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 7712 AATGTCAGGCCGGGCATAAGACCACGTTTCTTGAGCCAAAAGATGGCTGCAAAGGATCCT 7771 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || || ||||| || || || || ||||| |||| ||| | | ||||| | | | | Sbjct 7772 GAGAAAAAGATACCCTCGACAGCAGCAAATGCAACAAGCCGCACTCCAAAGCTTGATTCC 7831 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | || |||||||| | ||||| |||||||| || Sbjct 7832 GTATCCGAGATCCACTTGAGTGCCCAGTCGGCCTTTTT 7869 Score = 122 bits (134), Expect = 1e-22 Identities = 209/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376 || || || || || ||||||||||| ||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| ||||| || ||||||||| | | || ||| || || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 ||||| ||| | | ||| || || || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 42497 TGTTTTATAAAATATTTTTCGTC--CGGTGTTAATTTATT-CCAATCATTGATATCTTTA 42553 | ||||| || ||| || | || | | || ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 42554 GATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAG 42613 || | |||||||| || | ||||| || || |||||||| ||||| ||||| |||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 42614 A 42614 | Sbjct 8375 A 8375 >seq1193 Length=8092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||| | |||| || ||||| ||| | || | | |||||||||||| ||||||||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 72244 GCACCATTGGTCCCGGAGATATA 72266 |||||| || || | ||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671094250452080