Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3174 127 5e-24 seq1447 116 9e-21 seq624 105 2e-17 >seq3174 Length=2562 Score = 127 bits (140), Expect = 5e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 |||| ||||| | ||||| || ||||| ||||||||||| || || | ||| || |||| Sbjct 1846 CAGAAAGAGTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAG 1787 Query 104448 GAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTT 104507 | || |||||||| || || |||||||| || || ||||| || | ||||| || | Sbjct 1786 GTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACT 1727 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||| || || || ||||| ||||| || || || || ||||| |||||| Sbjct 1726 CTACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCATT 1674 >seq1447 Length=6688 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || ||||| || || ||||| || ||||| | ||||| Sbjct 2197 AAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTC 2256 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| ||||| || | ||| || |||||||| ||||| |||||||| Sbjct 2257 TTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATC 2316 Query 104467 CTGAATCTTTGCTTTTACATTTTC 104490 ||||||||| || || ||||| || Sbjct 2317 CTGAATCTTGGCCTTGACATTGTC 2340 >seq624 Length=13322 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| ||||| || ||||| || || || || || ||||| || ||||||||| Sbjct 7806 GTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGATCCTTTGCAGCCATCTTTTGG 7747 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | |||||| | || |||||||| || | || ||||||||||| ||||| | || Sbjct 7746 CTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCTCTAACGAGTTGATTTCACGTGAT 7687 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTAC 269295 || ||| | || |||||| |||||| |||| || || Sbjct 7686 GAGGGTCTTCATACCGACTTTGCTTGTCTATTGTTCAC 7649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151319357219464