Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq56 219 7e-53 seq1360 190 3e-44 >seq56 Length=36700 Score = 219 bits (242), Expect = 7e-53 Identities = 211/268 (79%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| |||| |||||| || ||||||||||| ||||||||||| ||||| Sbjct 36217 GCCAAGCGTCATCGTAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCTGCTAT 36275 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || ||||||||| | ||||| || | || ||||||| Sbjct 36276 TCGTCGTCTAGCTCGTCGTGGCGGTGTCAAGCGTATTTCTGGTCTGATTTACGAAGAGAC 36335 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| ||||||| || || || || Sbjct 36336 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCTGTCACTTACACTGA 36395 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||| ||||||||||| || | ||| |||| ||||| | ||||| ||||| Sbjct 36396 GCACGCCAGACGCAAGACTGTCACTTCTCTTGATGTCGTATATGCTCTTAAACGCCAAGG 36455 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| ||||| || ||||| Sbjct 36456 CCGCACTCTTTACGGTTTCGGTGGTTAA 36483 >seq1360 Length=7143 Score = 190 bits (210), Expect = 3e-44 Identities = 166/204 (81%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 203 GCCAAGCGTCATCGTAAGAT-TCTTCGTGACAACATTCAAGGTATCACTAAGCCTGCTAT 145 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| ||||||||| ||||||| | |||| ||||||| Sbjct 144 CCGTCGTCTAGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTAATCTACGAAGAGAC 85 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| |||||||| ||| ||| |||| ||||||| || || || || Sbjct 84 CCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCTGTCACTTACACTGA 25 Query 16612 GCACGCTAAACGTAAGACTGTCAC 16635 |||||| | ||| ||||||||||| Sbjct 24 GCACGCCAGACGCAAGACTGTCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070301143094