Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1370 215 6e-51 seq624 127 3e-24 seq1193 123 3e-23 >seq1370 Length=7093 Score = 215 bits (238), Expect = 6e-51 Identities = 484/721 (67%), Gaps = 12/721 (2%) Strand=Plus/Minus Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 5931 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 5872 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | |||| || ||||| ||| | || | | |||||||||||| || || ||| Sbjct 5871 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 5812 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 | |||||| || || | ||||| ||| | | || || ||| || || Sbjct 5811 AGACCATTTGTTCCAGCAATATATGAACCAGAAGACCTGATCTTGTGAATGTTTAAGCCA 5752 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || | || ||||| | || ||| |||| || ||||| || || Sbjct 5751 ATACCACCAGCAGTCTTTGAGATCATGGCACATGTCTTTAGGGTAGAGTAGATGCCTTCA 5692 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 ||| |||||| ||| | || | ||||| ||||||||||| || || || || Sbjct 5691 ATGGAATCATCCTCAATGGTGAGCAAGAAACAACTAGACATTTGTGGATGAGGGGTACCA 5632 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 |||||||| | || || || ||||| || || | ||||| || | |||||||| ||| Sbjct 5631 GCATTAAAGAGCGTGGGTGATGCGTGGGTGAAAAACTTTTCGGACATGAGATTGTAAGTC 5572 Query 63678 TCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63736 ||||| || | || | || || | ||||| || || ||||||||||| | |||||| Sbjct 5571 TCAATGGCAGCTTCGACGTCATCACCG-TGAATGCCAACAGCGACACGCATCAGCATGTG 5513 Query 63737 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63796 |||||| | ||| | | ||| ||| || || || || || || | ||| || Sbjct 5512 CTGAGGACGCTCAGCAGTTTTGCGGTTGATGCGCAGCAGATAAGAGCGCTCAAGAGTCTT 5453 Query 63797 AAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 || ||||| |||||||| ||||| ||||| || || ||||| |||| ||||| Sbjct 5452 GAAGCCAAAGTAGTTGTAGTTGAAA--TCTCGGTCATATATAATTGCCGAATTGAGGCGG 5395 Query 63855 TCCTTATATTTGTTAACTAT---ATCCATGGTGATACTTGAAATAATCGGAGAATGTTTC 63911 ||| || | || || || ||||||||| | | || || || ||||||||||| Sbjct 5394 TCCGAATGT---TTCACGATGCACTCCATGGTGGTTTTGGAGATCATAGGAGAATGTTTG 5338 Query 63912 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63971 || || ||||| | || || |||||||| | ||| || || |||| ||| Sbjct 5337 TTGTTCTTTGGATTGATATGGTCAAATAAATCTTGCATAACAGAGGAGAACTGTTTCTTT 5278 Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 ||||||||||| | || || | ||| || | || || || || ||||| || || ||| Sbjct 5277 GTTTCCTTGTGCAAGTTGGAAATGGCAATACGAGCAGCGAGGATAGCATAGTCGGGGTGT 5218 Query 64032 T 64032 | Sbjct 5217 T 5217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 62883 ATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 ||||| ||| |||| || |||||||||||||| || ||||||| | | || |||| Sbjct 6696 ATGTTGGCAATGCAAGCGAGGCCAGATTACAAACAGCCACCTCATCCGGAGACGAGTATT 6637 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 | || || ||||| | ||| || |||||||| || || | || || || || | Sbjct 6636 CAACAATTTCTGTGCATAAATTGCTGCACTTGATGGTCCCAAGGTTCTGCTGGTTGGATT 6577 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63058 | || || |||||||| ||||| ||| |||| |||||||| ||| | ||||| || Sbjct 6576 TGCGATTGCATGCATCCTTGTAAAGCATGTATGGGGTACCAGTCTCACTTTGAGAATC 6519 >seq624 Length=13322 Score = 127 bits (140), Expect = 3e-24 Identities = 209/301 (69%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 33556 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 || || || || || ||||| ||||| ||||| || ||||| || || |||||| Sbjct 8075 TCCTTCCTGTCCTTGACATATGTATCAATCAATAGCGAGTACATCTCACTGTGGATGTTT 8134 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| ||||| || ||||||||| | | ||| ||| ||| || || ||| | || Sbjct 8135 TCAATCATGATCTGGAAGCCGTAGAAATAGCGAGCTTCGAAAATTTGAACATCTTGAGAA 8194 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 ||||| || | | ||| ||||| || || || ||| ||| || ||||| ||||| ||| Sbjct 8195 AATCGCTCAACAAGATTCTCATTAACAATGCCATCAGAGGCAGCGAAAAAGGCCAACACA 8254 Query 33736 TGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTTA 33792 | ||||| || ||| || || | | | | ||| ||| || | ||||| Sbjct 8255 CGAGAAATAAAGTAGCGTTCATCATCAGTAAGACGCTCTTCCCAGTCAATGGTGTCTTTT 8314 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 || | |||||||| || | ||||| || || || ||||| ||||| |||||||||||| Sbjct 8315 GAAAGGTCTACTTCCTCGGCAGTCCAGAAAGAAGCTTCTGCTTTTTTGTACATGTTCCAG 8374 Query 33853 A 33853 | Sbjct 8375 A 8375 >seq1193 Length=8092 Score = 123 bits (136), Expect = 3e-23 Identities = 328/496 (66%), Gaps = 9/496 (2%) Strand=Plus/Plus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 ||| |||| ||||||| ||||| | ||| || || || | ||||| ||||| || Sbjct 6017 CTTATCCACAGTGAATTTAATGGCATCGGCAGCAGGACGCGACCTCAGATAATACATACC 6076 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 || || || || | ||| |||||||| ||||| || || ||||||| || | | Sbjct 6077 TGTCTTGAGTCCCTTGCGCCAGCCGTAAAAGTGCATGCTGGTCAGTTTGGCGTAGTT--G 6134 Query 62105 ATCT--GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 |||| || | ||||||||||| || || |||||| || || || || | ||| ||| Sbjct 6135 ATCTCGGCCAAATGGATATTCAGTGACTGCGATTGATCAATAAATGCACCACGGTCAGCA 6194 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT--AA 62220 || | | || || |||||||| |||||||| | |||||| || | | |||| | Sbjct 6195 GCGAGGTCAATAATAACCTTTTGTGAGATTTCCCATACAGTTTTGTAGA-TGGCTTTGAG 6253 Query 62221 TATCTTCTGGAAGGTTTGTATTC--TGAATGGATCCACCATCTGCCATAATCCTATTCTT 62278 | | ||| | | || || | || || || || | | ||||| | ||||| Sbjct 6254 TTCGCTAGGGATGCTCTGAATGCCTTGGATAGAACCGTTGGCAGAAATAATGCGGTTCTT 6313 Query 62279 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62338 || |||||||| | | |||||| | | | | || ||||| |||| || | Sbjct 6314 CATGCTGTCATTCCAGAGTCCGAGCTCGGTCAGATCCTTGAGAAGATGTTGATTGACAAT 6373 Query 62339 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62398 || ||||| ||||| | || | || || || || ||| |||||||| || | | Sbjct 6374 CTGGAATTCACCAGAAAGCACACGCCTGGTATAGATGTTAGATGTATACGGCTCAAAAGC 6433 Query 62399 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62458 |||||| || |||| |||||| | || || || || ||||| || || || | ||||| Sbjct 6434 CTCATTGTTGCCCAGAATTTGCGATGTAGACGCTGTTGGCATCGGAGCAACAAGCAAACT 6493 Query 62459 ATTTCTAAGACCGTAT 62474 || | || ||| ||| Sbjct 6494 GTTACGAACACCATAT 6509 Score = 82.4 bits (90), Expect = 1e-10 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||||| ||||| || || | || ||||| | | | || ||||| || || || ||| Sbjct 7879 ATATCAGCGTGCCATGGCTCAATATACATGGCAAAAGCACCTGGCCGCTTATTGCCACCC 7938 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | |||| || ||||| ||| | || | | |||||||||||| || || ||| Sbjct 7939 TGATCCACATATCGGGCAGTGTTGTTAAAGACGCGTAGCATTGGAATAATGCCATTGGAT 7998 Query 63438 ATACCATTGGTACCGGAGATATA 63460 | |||||| || || | ||||| Sbjct 7999 AGACCATTTGTTCCAGCAATATA 8021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622905478111280