Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1193 158 3e-33 seq1370 152 1e-31 seq624 150 5e-31 seq751 93.3 1e-13 >seq1193 Length=8092 Score = 158 bits (174), Expect = 3e-33 Identities = 207/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 364003 CTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCT 364062 || |||||||| ||| || || ||| |||||||||||||| || | || ||| Sbjct 7436 CTATTTTGCCCTGCCGAGGCACCCGGGCTTGATGATGTATGGGGTGAAGAATTTGATGCC 7377 Query 364063 CTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTA 364122 ||||||| || || ||| || || ||||||||| | || ||||||||||| Sbjct 7376 TTATACGAGAAATACGAACGTGAAGGCCGGGCTCGTAAAATCATCAAGGCACAGAAGCTG 7317 Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 |||| ||| || ||||||| || | |||||| || || || || ||| | ||||| ||| Sbjct 7316 TGGTATGCTGTCTTGGATTCTCAAAGTGAGACTGGTACCCCATACATGCTTTACAAGGAT 7257 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGT 364242 | ||||| ||||| |||||||||||| ||||||| || || | ||||| |||| Sbjct 7256 GCATGCAATCGCAAATCCAACCAGCAGAACCTTGGAACCATCAAATGCAGCAATTTATGC 7197 Query 364243 ACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 || |||||| |||||||| | |||| || ||| || || ||||| Sbjct 7196 ACAGAGATTGTTGAATACTCGTCTCCGGATGAGGTGGCTGTTTGTAA 7150 Score = 141 bits (156), Expect = 2e-28 Identities = 511/788 (65%), Gaps = 16/788 (2%) Strand=Plus/Minus Query 364378 AATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAG-CGTTCTAA 364436 ||||| ||||| ||||| | | ||||| || || | | || | || || || || Sbjct 6853 AATCTTAACAAGATTATCAATATCAATTACTACCCTGTGGA-GCAGGCTAGACGCTCAAA 6795 Query 364437 TATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 |||||| || || || || || || ||||| |||||||| || |||| ||||| | ||| Sbjct 6794 TATGCGCCACCGTCCCATCGGCCTAGGTGTTCAGGGCCTAGCAGACGCATTTATCAAGCT 6735 Query 364497 CAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 ||| | ||||| || || || || |||||| |||| ||||| | || Sbjct 6734 GCGTATGCCTTTTGACTCTCCAGAGGCCAAGAAGTTAAATAGACAGATATTTGAGGCCAT 6675 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 ||||||||||| | ||||| |||||||| | |||||| | || ||| || Sbjct 6674 TTATTTTGCCGCTCTTACTGCATCGTGTGAGCTTTCAAAAAGAGACGGTCCGTATGAAAC 6615 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC 364676 ||| || || || ||| | |||| | || ||| ||| | ||| |||| Sbjct 6614 TTACGAAGGATCGCCTGTCAGCAAGGGTATCTTGCAGCCCGATATGTGGGATGTGGAAGT 6555 Query 364677 ATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 ||| | || | ||||| | || || ||| | | || || ||||| ||| || Sbjct 6554 ATCAGACCAGTTTGACTGGAAAACCCTGCGTGCGGATATTGCTAAATATGGTGTTCGTAA 6495 Query 364737 C---TCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAA 364793 | | || ||| || || ||||| || || ||||| | || || || || ||||| Sbjct 6494 CAGTTTGCTTGTT---GCTCCGATGCCAACAGCGTCTACATCGCAAATTCTGGGCAACAA 6438 Query 364794 CGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATT 364853 ||| || || |||| |||| || | ||| | | || || ||||| || ||||| Sbjct 6437 TGAGGCTTTTGAGCCGTATACATCTAACATCTATACCAGGCGTGTGCTTTCTGGTGAATT 6378 Query 364854 TCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG 364913 | | | || ||| | | || |||||||||| |||| | ||| || ||| |||||| Sbjct 6377 CCAGATTGTCAATCAACATCTTCTCAAGGATCTGACCGAGCTCGGACTCTGGAATGACAG 6318 Query 364914 CATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC-CAGGATTTCCAG 364972 |||||||||| || || | || || |||||| | || ||||| || || | || Sbjct 6317 CATGAAGAACCGCATTATTTCTGCCAACGGTTCTATCCAAGGCATTCAGAGCATCCCTAG 6258 Query 364973 AAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGAT 365031 || || || | || |||||||| ||||||||||| || || | | | ||||| Sbjct 6257 -CGAACTCAAAGCCATCTACAAAACTGTATGGGAAATCTCACAAAAG-GTTATTATTGAC 6200 Query 365032 ATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGA 365089 | || || || || ||||| ||||| ||| ||||| | || ||| || || Sbjct 6199 CTCGCTGCTGACCGTGGTGCATTTATTGATCAATCGCAGTCACTGAA--TATCCATTTGG 6142 Query 365090 CTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 | || | || |||||| || || |||||| || ||||| ||| || || | Sbjct 6141 CCGAGATCAACTACGCCAAACTGACCAGCATGCACTTTTACGGCTGGCGCAAGGGACTCA 6082 Query 365150 AGACAGGT 365157 |||||||| Sbjct 6081 AGACAGGT 6074 >seq1370 Length=7093 Score = 152 bits (168), Expect = 1e-31 Identities = 192/264 (73%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 |||||||||||||| || | | ||| ||||||| || || ||| || || |||| Sbjct 6417 GATGTATGGGGTGAAGAATTCGATGCGATATACGAGAAATACGAACGTGAAGGCCGGGCT 6476 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 ||||| | || || |||||||| |||| ||| || ||||||| || | |||||| Sbjct 6477 CGTAAAATCATCAAGGCGCAGAAGCTGTGGTATGCTGTCTTGGATTCTCAAAGTGAGACT 6536 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || || || ||| | ||||| ||| | ||||| ||||| |||||||||||| ||||| Sbjct 6537 GGTACCCCATACATGCTTTACAAGGATGCATGCAATCGCAAATCCAACCAGCAGAACCTT 6596 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || || || || ||||| |||| || || ||| |||||||| | |||| || ||| Sbjct 6597 GGGACCATCAAGTGCAGCAATTTATGCACAGAAATTGTTGAATACTCGTCTCCGGATGAG 6656 Query 364276 ACTGCCGTATGTAACCTTGCGTCG 364299 || || ||||| || || ||| Sbjct 6657 GTGGCTGTTTGTAATCTGGCCTCG 6680 >seq624 Length=13322 Score = 150 bits (166), Expect = 5e-31 Identities = 316/464 (68%), Gaps = 13/464 (3%) Strand=Plus/Minus Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || ||| |||||||||||| || || || || || || || ||| | ||| || ||| Sbjct 7812 CGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGATCCTTTGCAGCCATC 7753 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||||| || ||||||| ||||||| || || || || || || ||||| ||| Sbjct 7752 TTTTGGCTCAAGAAACGTGGTCTTATGCCCGGCCTGACATTCTCTAACGAGTTGATTTCA 7693 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 || |||||||||||||||||||| ||||| ||| | | | || | || ||| || Sbjct 7692 CGTGATGAGGGTCTTCATACCGACTTTGCTTGTCTATTGT-TCACACTC--CTCAAGAAT 7636 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || | || | ||| | | || | || | ||||||| |||||| Sbjct 7635 AAGCCAGCAGACTCGGTTGTGCACCAAATCTTGACCGAGGCAGTTGCTATTGAACAGGAG 7576 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAGTAC 22790 || | ||||||| | ||||| || ||||| || |||||| |||| |||| | Sbjct 7575 TTCCTGACCGAGGCGCTCCCAGTTGCACTGATTGGCATGAATGCC-AATCTCATGAAGAG 7517 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTC-GGTTATGCAAAGCATTATA 22849 ||||||| | |||||||| || ||||| || | |||| || | |||||||| Sbjct 7516 ATATATTGAGTTTGTTGCTGACCGTCTCTTTTTGGAACTCGGGCTCCCCAAAGCAT---- 7461 Query 22850 ACGTCGTT---AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATT 22906 ||| |||| ||||||||||| | |||||| |||| || || |||| || ||||| | Sbjct 7460 ACGGCGTTGAGAATCCATTTGATTTCATGGAAATTATCTCTCTGCAAGGCAAAACCAACT 7401 Query 22907 TCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | || ||||| |||| || || || || || ||||| ||| Sbjct 7400 TTTTTGAAAAGCGAGTCGGCGAGTATCAGAAGAGTGGTGTAATG 7357 >seq751 Length=11703 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 65840 CATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACA 65899 |||| | |||||||| || || | |||||||| | || || ||||| || || Sbjct 8439 CATATGTGAACTGCACTACGTCCCCAAGGGCGTTACGCACAGTACCATCATACTTTGCCA 8380 Query 65900 TATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTA 65959 | |||||| |||||| ||||||| ||||||||| || ||| | | || ||||| | Sbjct 8379 TCACATCTTCTAATGCCTTGACAAGACGACGCTGGATATACCCAGTTTCGGCCGTTTTGA 8320 Query 65960 CCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCA--GAAAA 66002 | |||||||||| |||||||||||| || ||| ||| ||||| Sbjct 8319 CAGCGGTATCAATGAGACCTTCACGGCCACCCATAGCATGGAAAA 8275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303264125589956