Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq624 138 1e-27 seq1193 107 2e-18 seq274 89.7 5e-13 seq3174 84.2 2e-11 seq1447 82.4 7e-11 >seq624 Length=13322 Score = 138 bits (152), Expect = 1e-27 Identities = 360/529 (68%), Gaps = 35/529 (7%) Strand=Plus/Minus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAG---CAGCACCGCG 46143 || ||| | ||||| || |||||||||| | ||||||||| | | | | | | | Sbjct 7881 CCTTGCATTCGCAAAAAGGCCGACTGGGCACTCAAGTGGATCT-CGGATACGGAATCAAG 7823 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 |||| | | ||| | || || ||||| ||| ||||| ||||||| || || Sbjct 7822 -CTTTGGA-GTGCGGCTTGTTGCATTTGCTGCTGTCGAGGGTATCTTTTTCTCAGGATCC 7765 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 ||||| |||||||||| |||| || | || | | |||||||||||||| || || Sbjct 7764 TTTGCAGCCATCTTTTGGCTCAAGAAACGTGGTCTT-ATGCCCGGCCTGACATTCTCTAA 7706 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACAC 46322 |||| |||| || || || ||||| || ||||| |||||||| ||||| | | | |||| Sbjct 7705 CGAGTTGATTTCACGTGATGAGGGTCTTCATACCGACTTTGCTTGTCTATTGT-TCACAC 7647 Query 46323 TCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC---ATGTTCAAGGAGGCGGT 46379 | | | | | |||| | | ||| | || || | || || | ||||| || Sbjct 7646 T--CCTCAAGAATAAGC---CAGCAGACTCGGTTGTGCACCAAATCTTGACCGAGGCAGT 7592 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC 46439 || ||||| ||||||| | || | || || || | ||| ||| | |||||||| || Sbjct 7591 TGCTATTGAACAGGAGTTCCTGACCGAGGCGCTCCCAGTTGCACTGATTGGCATGAATGC 7532 Query 46440 ACAGTC-AATG-TGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT---T 46494 || || ||| | || || || |||||||| || ||||| || | || | || Sbjct 7531 -CAATCTCATGAAGAGA-TATATTGAGTTTGTTGCTGACCGTCTCTTTTTGGAACTCGGG 7474 Query 46495 CACCAGCCGAAGCATTTTCACGCGCG----CAATCCATTTGAGTTTATGAACAACATCTC 46550 | || || |||||| ||| ||| ||||||||||| || ||| | | ||||| Sbjct 7473 CTCC--CCAAAGCAT----ACG-GCGTTGAGAATCCATTTGATTTCATGGAAATTATCTC 7421 Query 46551 CCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 ||| | |||||||| || ||||| |||||||| |||||||||||| || Sbjct 7420 TCTGCAAGGCAAAACCAACTTTTTTGAAAAGCGAGTCGGCGAGTATCAG 7372 >seq1193 Length=8092 Score = 107 bits (118), Expect = 2e-18 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 145630 CGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGC 145688 ||| |||||||||||||| ||| ||| | ||| | || ||||| || ||||| | || Sbjct 7140 CGAGGCCAAATTACAAACAGCCACCTCATCCGGAGACG-AGTATTCAACAATCTCTGTGC 7198 Query 145689 ACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGT 145748 | |||||||| |||||||||||||| || || ||||| || ||| | ||||| || | Sbjct 7199 ATAAATTGCTGCATTTGATGGTTCCAAGGTTCTGCTGGTTGGATTTGCGATTGCATGCAT 7258 Query 145749 CCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 ||||||| |||||||| || |||||||| Sbjct 7259 CCTTGTAAAGCATGTATGGGGTACCAGTCTC 7289 >seq274 Length=20666 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| || || || |||||||| | || || ||||| |||||||| || Sbjct 19182 GTAGACTCTTTCTGGATATTGTAATCCGAAAGAGTACGGCCATCCTCAAGCTGCTTTCCA 19123 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || |||||||||||||| || |||||||| ||||| || ||| || |||| Sbjct 19122 GCGAAAATCAAACGCTGCTGGTCAGGGGGGATTCCCTCTTTATCTTGGATCTTGGCCTTG 19063 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||||| || | ||| | || ||||| || || || Sbjct 19062 ACATTATCAATGGTGTCGGATGACTCGACTTCCAAGGTGATTGTCTTACCCGTAAGGGTC 19003 Query 131218 TTTACGAAAATCTGCAT 131234 || || || || ||||| Sbjct 19002 TTGACAAAGATTTGCAT 18986 >seq3174 Length=2562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 131071 GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATT 131130 ||||| |||||| || ||||| || || |||| | |||||||||||| || |||||| Sbjct 1838 GTGCGGCCGTCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGGATT 1779 Query 131131 CCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCG 131190 ||||| ||||| || || ||||| | || | |||||| | ||||| | || Sbjct 1778 CCTTCCTTGTCTTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAAGACTCTACCTCA 1719 Query 131191 ACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||| | ||| || || || || || || ||||| || ||||| Sbjct 1718 AGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAATATTTGCAT 1675 >seq1447 Length=6688 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| || | || || ||| || ||||||||||| Sbjct 2213 GTAGACTCCTTCTGGATGTTGTAGTCTGAAAGAGTACGGCCGTCTTCAAGCTGCTTGCCA 2272 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||| ||||||||||| ||||| || || || |||| Sbjct 2273 GCGAAAATCAGACGCTGCTGGTCAGGAGGGATTCCCTCTTTATCCTGAATCTTGGCCTTG 2332 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGA 131185 | | || | ||| || | |||||||| Sbjct 2333 ACATTGTCAATAGTGTCTGAGGACTCGA 2360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471981186942720