Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Batrachochytrium_20salamandrivorans_20[genbank_20GCA_5F002006685.1_2 02017-02-24] 5,358 sequences; 32,636,440 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2860 107 1e-18 seq3142 98.7 7e-16 seq1951 98.7 7e-16 seq2504 87.8 1e-12 seq4878 84.2 1e-11 >seq2860 Length=2964 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2708 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2767 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 2768 GCCAGTATTTAGCTTTA 2784 >seq3142 Length=2601 Score = 98.7 bits (108), Expect = 7e-16 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||| Sbjct 84 TCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTAT 25 Query 20015 TTAGCCTTA 20023 ||||| ||| Sbjct 24 TTAGCTTTA 16 >seq1951 Length=4762 Score = 98.7 bits (108), Expect = 7e-16 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||| Sbjct 3886 TCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTAT 3945 Query 20015 TTAGCCTTA 20023 ||||| ||| Sbjct 3946 TTAGCTTTA 3954 >seq2504 Length=3529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||| ||||||||| |||||||||||||||||||||||||||||||||| || | ||| Sbjct 3467 TCAAAATTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCAGTAT 3526 Query 20015 TTA 20017 ||| Sbjct 3527 TTA 3529 >seq4878 Length=1265 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||||||||||||| ||||||||||||||||||||| ||||||||||| | || ||| Sbjct 1062 TCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTATTGCTAGTAT 1121 Query 20015 TTAG 20018 |||| Sbjct 1122 TTAG 1125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334925327738498